Music Gone in iPhone 3S

Just updated to iTunes 11.1 on my OS X 10.8.5, 3.06 GHz Intel Core 2 Duo iMac. After wireless sync with my iPhone 3s on IOS 6.1.3, 95% of my music disappeared. I'm currently running a wired sync and it's copying the music to the device.  #1. Why did this happen? #2. Why is is re-copying the music library when all that was changed was the file index?  Anyone got any ideas?

This was most likely a problem with the last sync, whenever that was. The music was still on the iPhone, but the directory structure was misbehaving. If a regular sync does not correct it, you'll need to do a Restore.

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