Music plays in iTunes, but Finder doesn't show them

Okay this is wierd and I don't know if it belongs to iTunes or to HFS+.
When I start iTunes, I can see my whole library of about 50'000 songs. In the finder, at the same time, I see maybe 30 or 40 artists, way less than I have songs. Now, say, for example, in iTunes, I see "a-ha" as artist. In the finder windows that shows the directory where my music is, I don't see a-ha. Now, if I do a Get Info on a song of a-ha, suddenly, a-ha appears in the Finder. With exactly this album and exactly this song. If I Get Info of another song, that one appears too. Funny enough, with the correct creation dates and everything, as if that song always there and from there after, it is there. But not before. I do a daily backup to another disk (just copying, no mirroring), funny enough, that other disk behaves exactly the same: it doesn't show my music anymore.
If I open a terminal console, its the same: I don't see anything anymore there, but the according to Disk Utility, the amount of items on that disk is about correct. Does anyone have a clue what's happening here? I already verified both disks, no errors. They are attached using USB and each is part of a single 3TB concantenated RAID.

Sounds to me like you might have disk directory problems. Try using disk utility to repair the disk (use repair instead of verify - just in case). If not, you might want to buy and try diskwarrior.
Have you tried rebooting? If not, try that first.
Also, try "right clicking" (or control-clicking) on a song, and select show in finder from the drop down menu - is the file where you think it should be?

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