My Java permissions are wrong can I correct this?

Ran DiskUtility and did a repair... did a restart and ran it againg, the same permissions were wrong again... can I go into 'get info' and manually reset them?
Permissions differ on "System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/dt.jar", should be lrwx-xr-x, they are lrw-r-r--. Also, some CoreServices are wrong, too...

http://support.apple.com/kb/TS1448

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