My Mac keeps hanging

27inch iMac, 3.06 GHz Intel Core 2 Duo running OS x 10.6.4 with 1TB HD and 4 GB 1067 MHz RAM
All was fantastic until recently... Problem I now have is that app after app just hangs and can only be restarted via Force Quit. Even then, many apps refuse to work properly. This seems to happen most often when Time Machine is running a backup (to an external HD plugged directly into the USB port, not via a hub) but not always.
Thinking that Time Machine may have been the problem, I've followed the excellent Pondini's webpage, repaired the external HD, etc, etc but the problem remained. Eventually, with a really corrupted external HD, I reformatted the external HD (zero reformat), reset Time Machine and then did a completely new backup (yes I know that this was a "sledgehammer to crack a nut" but as the external HD had become corrupted, I didn't have much to lose). Now Time Machine is reset and runs just fine but the problem remains...
Curiously, the iMac also doesn't always want to reboot and when I select Restart or just Shut Down, the iMac closes all the open apps then just sits on the empty desktop screen, doing nothing.
Any suggestions?

Now, that's such a great advance on advices I've been reading from just 1 year ago: http://discussions.apple.com/message.jspa?messageID=10196584 where people just try to guess what's wrong.
While I do wonder why the console isn't used more, and developed into a better diagnosing tool by apple, with relevant information for non-techies, it's still quite a reliable option to identify issues with the machine - unlike other OS's.
Just re-affirming how good it is to see a topic created and solved in two steps through using the logs!

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        TOSHIBA MK5065GSXF disk0 : (500.11 GB)
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        AdobePDFViewer: Version: 11.0.09 - SDK 10.6 [Click for support]
        Flash Player: Version: 17.0.0.134 - SDK 10.6 [Click for support]
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        iPhotoPhotocast: Version: 7.0 - SDK 10.8
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        Flash Player  [Click for support]
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        Auto backup: YES
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            Total number of backups: 28
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            Last backup: 2015-03-28 16:02:51 +0000
            Size of backup disk: Too small
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             8%    WindowServer
             4%    ScreenSaverEngine
             1%    com.apple.WebKit.Plugin.64
             1%    Locum
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        146 MB    Safari
        103 MB    ocspd
        94 MB    mds_stores
        86 MB    com.apple.WebKit.Plugin.64
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        2.26 GB    Active RAM
        447 MB    Inactive RAM
        1.25 GB    Wired RAM
        479 MB    Page-ins
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    Finally, should i worry that there are 11 errors on the Hard drive.
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    Next, as John pointed out uninstall MacKeeper and keep away from it from now on.  Linc Davis posted excellent instructions for removing MacKeeper:
    Linc Davis including Apple logo changes for feature 126 Apple image including Apple logo changes for feature 126 Apple image ends here
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    [DocumentBodyStart:69ceddb2-c4fe-4b04-be3c-91348427076e]
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    ☞ Don't try to remove MacKeeper while running in safe mode.
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    7/21/14 20:23:00.401
    com.apple.preference.network.remoteservice[9734]
    Bogus event received by listener connection:
    <error: 0x7fff7c54bb50> { count = 1, contents =
    "XPCErrorDescription" => <string: 0x7fff7c54be60> { length = 18, contents = "Connection invalid" }
    7/21/14 20:23:00.697
    com.apple.preference.network.remoteservice[9734]
    *** WARNING: -[NSImage compositeToPoint:operation:fraction:] is deprecated in MacOSX 10.8 and later. Please use -[NSImage drawAtPoint:fromRect:operation:fraction:] instead.
    7/21/14 20:23:00.698
    com.apple.preference.network.remoteservice[9734]
    *** WARNING: -[NSImage compositeToPoint:fromRect:operation:fraction:] is deprecated in MacOSX 10.8 and later. Please use -[NSImage drawAtPoint:fromRect:operation:fraction:] instead.
    7/21/14 20:23:05.951
    configd[19]
    subnet_route: write routing socket failed, Network is unreachable
    7/21/14 20:23:07.887
    configd[19]
    network changed: Proxy
    7/21/14 20:23:09.953
    mDNSResponder[71]
    mDNS_RegisterInterface: Frequent transitions for interface en0 (169.254.85.234)
    7/21/14 20:23:14.928
    WindowServer[6768]
    window 137 is already attached to window 134
    7/21/14 20:23:15.965
    com.apple.launchd.peruser.501[156]
    (com.apple.NetworkDiagnostics[9735]) Check-in of Mach service failed. Already active: com.apple.NetworkDiagnostic.agent
    7/21/14 20:23:16.285
    WindowServer[6768]
    _CGXGetWindowOrderingGroup: Invalid window 0x137
    7/21/14 20:23:18.162
    configd[19]
    network changed: DNS*
    7/21/14 20:23:18.164
    UserEventAgent[11]
    Captive: [CNInfoNetworkActive:1655] en0: SSID 'SJSU_premier' making interface primary (cache indicates network not captive)
    7/21/14 20:23:18.165
    UserEventAgent[11]
    Captive: CNPluginHandler en0: Evaluating
    7/21/14 20:23:18.167
    UserEventAgent[11]
    Captive: en0: Not probing 'SJSU_premier' (cache indicates not captive)
    7/21/14 20:23:18.167
    UserEventAgent[11]
    Captive: CNPluginHandler en0: Authenticated
    7/21/14 20:23:18.172
    configd[19]
    network changed: v4(en0!:10.189.221.20) DNS+ Proxy+ SMB+
    7/21/14 20:23:19.617
    locationd[76]
    NETWORK: requery, 0, 0, 0, 8, items, fQueryRetries, 0, fLastRetryTimestamp, 427680957.6
    7/21/14 20:23:20.265
    locationd[76]
    need a scan, count, 0, 0, lwatchdog, 0.0, interval, 60.0, needWatchdog, 1
    7/21/14 20:23:23.283
    digest-service[9739]
    label: default
    7/21/14 20:23:23.283
    digest-service[9739]
    dbname: od:/Local/Default
    7/21/14 20:23:23.284
    digest-service[9739]
    mkey_file: /var/db/krb5kdc/m-key
    7/21/14 20:23:23.284
    digest-service[9739]
    acl_file: /var/db/krb5kdc/kadmind.acl
    7/21/14 20:23:23.285
    digest-service[9739]
    digest-request: uid=0
    7/21/14 20:23:23.287
    digest-service[9739]
    digest-request: netr probe 0
    7/21/14 20:23:23.288
    digest-service[9739]
    digest-request: init request
    7/21/14 20:23:23.292
    digest-service[9739]
    digest-request: init return domain: MACBOOKAIR-D7A server: MACBOOKAIR-D7A indomain was: <NULL>
    7/21/14 20:23:23.310
    digest-service[9739]
    digest-request: uid=0
    7/21/14 20:23:23.310
    digest-service[9739]
    digest-request: init request
    7/21/14 20:23:23.314
    digest-service[9739]
    digest-request: init return domain: MACBOOKAIR-D7A server: MACBOOKAIR-D7A indomain was: <NULL>
    7/21/14 20:23:26.102
    locationd[76]
    Fence: loc watchdog cancel, count, 1, 1, client, -1
    7/21/14 20:23:35.723
    locationd[76]
    NETWORK: no response from server, reachability, 2, queryRetries, 0
    7/21/14 20:23:50.210
    locationd[76]
    NETWORK: requery, 0, 0, 0, 8, items, fQueryRetries, 1, fLastRetryTimestamp, 427692199.6
    7/21/14 20:23:56.534
    EvernoteHelper[6916]
    No result from Safari loading plugins.
    7/21/14 20:23:56.543
    2BUA8C4S2C.com.agilebits.onepassword4-helper[6893]
    442003 [EXT:0x7fdea0c8adf0:<OP4ExtensionHTTPConnection: 0x7fdea0cbc870>] M webSocketForURI: | [ES4] Extension connected Safari-Extension 'safari-extension://com.agilebits.onepassword4-safari-2bua8c4s2c / (null)'
    7/21/14 20:23:56.544
    2BUA8C4S2C.com.agilebits.onepassword4-helper[6893]
    442003 [EXT:0x7fdea0ca0bc0:<OP4ExtensionClient: 0x7fdea0cc5ce0>] S didOpen | [ES4 0x7fdea0cc5ce0] Connected 'safari-extension://com.agilebits.onepassword4-safari-2bua8c4s2c:60557'
    7/21/14 20:23:56.544
    2BUA8C4S2C.com.agilebits.onepassword4-helper[6893]
    442003 [EXT:0x7fdea0e77670:<OP4ExtensionClient: 0x7fdea0cc5ce0>] S handleHello: | Welcoming version 4.2.3 of Safari-Extension.
    7/21/14 20:23:56.545
    2BUA8C4S2C.com.agilebits.onepassword4-helper[6893]
    442003 [EXT:0x7fdea0e77670:<OP4ExtensionClient: 0x7fdea0cc5ce0>] S sendAction:payload: | [ES4 0x7fdea0cc5ce0] safari-extension://com.agilebits.onepassword4-safari-2bua8c4s2c sendAction: 'welcome'
    7/21/14 20:24:06.210
    locationd[76]
    NETWORK: no response from server, reachability, 2, queryRetries, 1
    7/21/14 20:24:20.353
    locationd[76]
    loc watchdog expired, count, 0, 0
    7/21/14 20:24:25.960
    syncdefaultsd[9752]
    Initial test for reachability failed. Let's mark service as unreachable for now
    7/21/14 20:24:26.600
    2BUA8C4S2C.com.agilebits.onepassword4-helper[6893]
    442003 [EXT:0x7fdea0c8adf0:<OP4ExtensionClient: 0x7fdea0cc5ce0>] S findExtensionProcessForPort: | [ES4 0x7fdea0cc5ce0] Connected safari-extension://com.agilebits.onepassword4-safari-2bua8c4s2c:60557: <NSRunningApplication: 0x7fdea0d39380 (com.apple.Safari - 9748)>
    7/21/14 20:24:26.607
    2BUA8C4S2C.com.agilebits.onepassword4-helper[6893]
    442003 [EXT:0x7fdea0c8adf0:<OP4ExtensionClient: 0x7fdea0cc5ce0>] S verifyClient:satisfiesRequirement: | Extension client 'safari-extension://com.agilebits.onepassword4-safari-2bua8c4s2c' (<NSRunningApplication: 0x7fdea0d39380 (com.apple.Safari - 9748)>) passed validation
    7/21/14 20:24:26.668
    com.apple.launchd[1]
    (com.apple.WebKit.Networking.70CE34EB-F439-4DAA-9F7A-B0614F74945A[9750]) Exited with code: 1
    7/21/14 20:24:26.689
    2BUA8C4S2C.com.agilebits.onepassword4-helper[6893]
    442003 [EXT:0x7fdea0cb8660:<OP4ExtensionClient: 0x7fdea0cc5ce0>] S didClose | [ES 0x7fdea0cc5ce0] Disconnected 'safari-extension://com.agilebits.onepassword4-safari-2bua8c4s2c' (<NSRunningApplication: 0x7fdea0d39380 (com.apple.Safari - 9748)>)
    7/21/14 20:24:46.574
    Console[6847]
    Marker - Jul 21, 2014, 20:24:46

  • Why my MacBook Air keeps hanging on System Preferences and Setting whenever I attempt to open it ? ?

    Why my MacBook Air keeps hanging on System Preferences and Settings whenever I attempt to open it ?

    Please read this whole message before doing anything. This procedure is a test, not a solution. Don’t be disappointed when you find that nothing has changed after you complete it. Step 1 The purpose of this step is to determine whether the problem is localized to your user account. Enable guest logins* and log in as Guest. For instructions, launch the System Preferences application, select Help from the menu bar, and enter “Set up guest users” (without the quotes) in the search box. Don't use the Safari-only “Guest User” login created by “Find My Mac.” While logged in as Guest, you won’t have access to any of your personal files or settings. Applications will behave as if you were running them for the first time. Don’t be alarmed by this; it’s normal. If you need any passwords or other personal data in order to complete the test, memorize, print, or write them down before you begin. Test while logged in as Guest. Same problem? After testing, log out of the guest account and, in your own account, disable it if you wish. Any files you created in the guest account will be deleted automatically when you log out of it. *Note: If you’ve activated “Find My Mac” or FileVault, then you can’t enable the Guest account. The “Guest User” login created by “Find My Mac” is not the same. Create a new account in which to test, and delete it, including its home folder, after testing. Step 2 The purpose of this step is to determine whether the problem is caused by third-party system modifications that load automatically at startup or login. Disconnect all wired peripherals except those needed for the test, and remove all aftermarket expansion cards. Boot in safe mode* and log in to the account with the problem. The instructions provided by Apple are as follows: 
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    When you see the gray Apple logo, release the shift key.
    If you are prompted to log in, type your password, and then hold down the shift key again as you click Log in.
     Safe mode is much slower to boot and run than normal, and some things won’t work at all, including wireless networking on certain Macs. The login screen appears even if you usually log in automatically. You must know your login password in order to log in. If you’ve forgotten the password, you will need to reset it before you begin. *Note: If FileVault is enabled, or if a firmware password is set, or if the boot volume is a software RAID, you can’t boot in safe mode. Test while in safe mode. Same problem? After testing, reboot as usual (i.e., not in safe mode) and verify that you still have the problem. Post the results of steps 1 and 2.

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