My mac mini hard drive crashed. I replaced it but now not all applications work. How do I fix this?

When my mac mini (late 2009) hard drive crashed I installed a new one. During the process I used migration assistant to bring in my time machine backup. When finished I did not have all applications...iPhoto, CC Cleaner, Chrome, and most importantly Reunion all failed to load. I have since manuay fixed Chrome and CC Cleaner but still do not have Renion or the OSX iPhoto and other apple OSX applications working. Can someone help or driect me to the right forum?

Restore failed to provide all the applications and data. Took the mini to Apple genius today. They reinstalled OSX (same as I had done) then confirmed that the applications were not backed up to time machine...they will be in the future. After reloading each individual application they now work as expected and all the data seems to have been restored. Except the Reunion files which were near and dear. These are gone forever. Somehow, perhaps through my negligence, the 'GED' files were not stored in a "Reunion" folder and were not backed up...much like the apps. Now I'm trying to recover the files from the crashed drive.

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