My Mac OS 10.4.6 won't boot normally after new updates?

Pardon the fact that I'm a newbie...
It seems like a lot of people are posting about problems with the latest Mac OS updates. I installed some new updates Sunday night, and the system needed to be rebooted.
I was working, multitasking with Fire and Word, and in the process of printing a large Word document to my Acrobat printer, my system crashed. I could move the mouse, but there was no response from the keyboard or from my touch pad clicker. The only solution I found was to hard reboot.
Upon the reboot, there were no icons on my desktop, and neither my mouse button nor keyboard are functioning. However, I could move my mouse cursor.
I can boot in safe-mode, and all my files appear to be intact. I reboot from safe mode back to normal mode the problem in normal mode is the same. Clearly Mac OS isn't loading like it should.
I'm used to WindowsXP where multiple reboots usually solves the problem, but I gather thats not wise, and I really shouldn't be hard-rebooting.
Can anyone help me and give me some needed intuition with this? I'm a newbie with Mac, but pretty comfortable with Unix.
Thanks in advance!
MacBook Pro Mac OS X (10.4.6) 2.16 GHz Intel Core Duo, 2GB DDR2 SDRAM

Jake, I didn't have any problems with the updates.
I always run Disk Utilities permissions repair and verify disk before and after an OS or Security update. If verify disk reports an error, run Disk Utilities from the Installation Disc 1, specifically Repair Disk. (Some think running permissions repair is useless. I don't agree and have seen this clear up problems.)
If that doesn't do it, go back to Safe boot and check the startup items. A third-party startup item may be the problem.
Good luck. Don't want to rub it in, but I've been running since the MBP arrived on March 30 without any problems. But I've had glitches in the past, and probably will again in the future. That's life.

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