My pictures won't show up on my Hard Drive when I try to view them from my MacBook Pro

I just came back from a trip and have been trying to get my pictures off my iPhone and other camera to put on my external hard drive (it's about 17 GB, so I don't want to waste the space by keeping them on my MacBook). I transferred all the pictures from my phone to iphoto and then to my Hard Drive, and they showed up fine. I had to use the family PC though to get the pictures off of my camera and then transfer them to the same folder on my Hard Drive.
After having consolidated everything, I plugged my hard drive back into my MacBook to view my pictures, but although the folder was there, it appeared empty. I was really worried I had lost all my pictures, but that wasn't the case. When I plugged the hard drive back into the PC they were all there.
I tried taking the folder off the Hard Drive and putting it on my desktop. This worked- all the pictures were back. I didn't want to leave it there though, because they take up so much space, so I deleted the old folder on the Hard Drive and put that folder back. That seemed to work- I was able to see all the pictures again. However, when I plugged the Hard Drive back into my MacBook this morning, the pictures were gone again in the same way *** before.
I am really baffled as to what's going on here. I was hoping someone could tell me how I can keep the pictures on my Hard Drive and be able to view them there.

This is true of course, but doesn't cover the situation where some files are in the iTunes Media folder and others are on an external drive. In my case I keep my music in the Media folder and all my films on an external drive (there are too many to have on the internal drive). In iTunes 11, and before, it was easy to add those external files by holding down the alt/opt key while dragging to the sidebar. In iTunes 12 this is no longer possible. There are several workarounds: use TuneSpan to move the file after it's been added; delete the file from the Media folder and empty the trash then use iTunes Get Info which will report the file is missing and allow you to locate it; constantly switch the Add to iTunes toggle on and off as required. All of these require a lot more work than just holding down the alt/opt key while adding.
It constantly gets harder.

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