Need help with iPad app syncing in iTunes

When I first connect iPad to iTunes, and select apps, all the apps on iPad display, but they are semi-transparent.
When I uncheck sync, then only the apps that were installed originally show up, and are 'solid'.
When I try to sync apps on my iPad, it shows these 'solid' icons only (less apps in iTunes than I have on the iPad) and warns I will lose apps not shown if I sync?! That sounds more like a revert than a sync. I do not want to revert, I want iTunes to update itself to show the list of apps I have purchased on the iPad.
Anyone know how to get iTunes to show the apps I have on the iPad and let me sync them all to iTunes without losing what I purchased on the App Store through iPad?

How could we help you?
You did not even mention the name of the app.
Contact the app maker and ask.

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