Need To Flip Video Feed Before Capture

My video was filmed using a Red Rock attachment and it flips the video image before it hits the DV tape. All of my tapes carry upside down video, which is not a problem, I would just like to flip/rotate the video feed 180 degrees BEFORE I capture it. I have Final Cut Pro 6 within FCS2, can this be done with this software?
Thanks in advance for anyone's speedy reply.
~Ian

Because the editors have nearly 100 tapes to capture and flipping each video scene-by-scene is a terribly laborious process.
I've tried flipping already, but it still leaves unflipped frames at the beginning and end, and other video view boxes still show the original feed unflipped. Capturing it correctly before it gets imported into a project will solve all these problems and save the editors a lot of time.

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    Flip video ( I just bought one) makes AVI files (AVI is a container like QT is one) using 3ivX. All you need is the free Perian codec and you can playback, edit etc. Export the to a MOV container which doesn't reencode them and you should have usable files.
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