Need to sync iBooks on different computer than where everything else syncs

I been syncing my iPad at a home computer and using mobile me to keep calendar, contacts etc. in sync. Everything is working perfectly.
Now in my job, I am starting to create ePubs for iBooks, and would like to sync these files with my iPad from a work computer via iTunes. I have been emailing the ePub files home, then syncing.
I sure would like to be able to just sync the iBook part at work (using the same iTune account), so that I would have immediate access to the files that I am working on. I am loosing so much production time not being able to have immediate access to the ePub and making revisions.
Is anyone else doing this? Can I attempt it and now screw everything else up?
Thanks!

This link may be helpful.
http://support.apple.com/kb/TS1368#never

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