Netweaver Java Enterprise Portal System Copy issue

Dear friends,
We are trying to export Production portal online without down time and install Target system using import method.
Import process is successfull and we tried doing element.resync=true for force bootstrap from the database. We are able to see SAP standard applicaitons but all custom applications are missing. I mean all application under sap.com are available and all applicaitons under <ourcomapny>.org is not see. We checked the export dump we see all .SDA files for each application in the export dump.
If anyone know the reason why it didn't deploy. Please let me know. We are using Production and Sandbox: NW 2004s EHP1 SP4.
Thank You.
Regards,
Prasad

Please check the note below, which you need to do at the end of import.
Link: [Note 888718 - NW 2004s: Copy Usage EP]

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Subject modified
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