New 2012 server in a mixed 2003 and 2008 domain (in process of upgrading)

We are replacing a Windows Server 2003 machine which crashed and is gone, with a Windows Server 2012 Standard machine.  The old 2003 Server was a domain controller running along side one other 2003 server (which is getting replaced next) and
3  Windows Server 2008 R2 Standard x64 domain controllers which up and running.  When trying to add the Windows Server 2012 Standard server as a domain controller to an existing domain, we are getting the following error:
Verification of replica failed.  The forest functional level is Windows 2000.  To install a Windows Server 2012 domain or domain controller, the forest functional level must be at Windows Server 2003 or higher.
However, the domain was already brought up to at least the 2003 level when we added the current live 2008 domain controller (Windows Server 2008) several years ago.  When I now try to run Adprep on the Windows Server 2008 (adprep from the 2008
install CD) I get the following responses:
Command:  adprep /forestprep
Response:  Forest-wide information has already been updated.  [Status/Consequence] Adprep did not attempt to rerun this operation.
Command:  adprep /domainprep /gpprep
Response:  Domain-wide information has already been updated.  [Status/Consequence] Adprep did not attempt to rerun this operation.
I have gone to Active Directory Domains and Trusts on all of the other servers and each one is at a Windows Server 2003 Functional level and states that I can not raise the level because I have AD Dc's that are not running the appropriate version of
windows. And I get that due to the remaining 2003 server, but none are at Server 2000 level.
So it seems we have a conflict where the 2012 server thinks the domain is at the Windows 2000 level. Is there any way around this, or a way to find out where the conflict is coming from?
Thank you
Kevin C

Please proceed like the following:
Run netdom query fsmo to identify the current FSMO holders. It seems that the old DC was holding FSMO roles. If this is the case then seize them to another DC: https://support.microsoft.com/en-us/kb/255504
Do a metadata cleanup to remove the old DC reference: Use dsa.msc
and then remove the old DC computer account. Also, use dssite.msc
and remove the NTDS settings of the old DC then remove its references over there
After doing this, check again and try to raise the DFL and FFL. Do not forget to check that your DCs and AD replication are in healthy state using
dcdiag and repadmin commands.
This posting is provided AS IS with no warranties or guarantees , and confers no rights.
Ahmed MALEK
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