New AME "pass-through" for .h264

I have a question regarding Adobe Media Encoder's new "pass-through"capabilities with H.264. I am working on a long documentary. I have hours of footage shot on Canon H.264 .mov files. and I have .WAV audio recorded separately. The audio is usually one clip covering several video clips. Ideally I would sync the files in PP, get the audio levels correct, cut out all of the unusable bits and export as a fresh .h264 file that I will then take into Prelude for text transcription and creating sub clips. Then back into PP for final editing. Will the new AME's handling of .h264 files keep my video from being recompressed? Is  there better way that I might not have thought of? Thanks in advance, Chip

Is  there better way that I might not have thought of?
I think so.
Skip Prelude and just do it all in PP.

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