New Hard Drive: Mac Face/Question Mark on boot

I installed a new hard drive in my fathers iBook G4 1.33 GHz and installed Leopard. I instantly had problems after the installation was complete and the computer restarted. I got the Mac Face/Question Mark for a second and then it booted to the installation CD.
I used disk utilities to verify and repair the disk and permissions which both finished successfully. I tried to reboot with the same result: Mac Face/Question Mark for a second and then it booted to the installation CD. I decided to erase and reinstall Leopard. Installation complete - Restart - Mac Face/Question Mark. I decided to turn if off for the night.
I powered up in the morning with short-lived success, as I got the Leopard Welcome video. I set up the system and did some software updates, which eventually required a restart. Boom. Mac Face/Question Mark. I decided to hold the option key on my next restart to see if I could select the hard drive installation over the install CD. I was able to do so, and it booted fine to the hard drive. I continued my software updating, installed some more software like iLife '08, Firefox, Open Office, Stuffit Expander, etc. After all my installation and updating, the system operates great, except when I have to start up. I still have the Mac Face/Question Mark.
I have a theory that the hard drive jumper is set incorrectly, but I don't want to waste 45 mins. cracking the thing open to find out. Can anyone confirm? I'm open to all other theories, of course.

No jumper means Cable Select (CS). This would mean that the cable from the motherboard to the drive has a blue connector at the motherboard and a black connector on the end where the drive plugs in. The gray connector in the middle is the Slave position. Master/Slave relationship is determined by where on the cable the device is plugged in.
The CS cables and the setting was not used very often until around 2004 or 2005. Until that time all of the connectors on the cable were the same color and the Master/Slave setting was determined by the jumper on the drive.
It's very possible that you are trying to use a drive that's been setup for the newer systems as Cable Select, when actually you should force the drive to be a Master by installing a jumper on the proper pins.
Are there two deviced on the cable besides the motherboard, and are all of the connectors the same color? Or is the connector that plugs into the motherboard black? Then you are probably not looking at a CS buss.

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