New iMac email acting strange missing and flashing text

Having a problem with mail,
bought my new iMac and setup mailboxes. 
all emaiil from comcast server was downloaded (more thaqn 35,000 mail messages)
when browsing mail I noticed mail body text was not showing in the preview window, but the message showed in the list.
I could see the message if I doubleclicked on it and opened it.
sometimes the mail text and images would be flashing and sometimes missing, other times present.
I called Apple support and went through several steps to try and zero in on the problem.
we reset and reindexed.
we created a copy of the mail folder on the desktop
Created a new mailbox and mail seemed to work OK, until the mail folder was imported into the new mailbox, then I had the same weird problem.
somehow, when I went back to my original mailbox, there were none of the old mail items in the mailbox and they were all missing from the mail server. 
All the 35,000 emails were gone.  It looks like the setting in the new mailbox must have been set to delete emails from the server (maybe as a default)
after a few weeks, the mailbox continued to accumulate emails and I have not seen that problem again.
It appears that there was some mail buffer in the new iMac that got overloaded or exceeded capacity and couldn't handle the 35,000 emails.
But, I need to recover those deleted emails.
Has anyone found the cause for this erratic behavior whith large mail folders?
I still have that old mail folder
how can I restore it and recover those emails, without erasing what I now have (new emails) from the server?
is there a limit on the number of emails on the iMac?  my old Mac dual G5 system didn't have this problem.
Thanks,
Matt

You could try importing the mailboxes (File ▹ Import Mailboxes) from the old Mail folder, at the risk of possibly corrupting the database again. There is no fixed limit on the number of messages, and the number you had is not unusual. It's corrupt messages that cause problems.

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