New install... moved iTunes... Apps are gone?

I just created a brand new system w/ Snow Leopard, and migrated all my stuff over successfully.
(No more cobwebs for me!)
Although I use an external HD, iTunes is working perfectly (I know many folks have problems), HOWEVER, my iPhone Aps aren't there!
They're still on my phone, but they're not in iTunes, even though they're in my iTunes Library.
Do I need to de-link my phone from my other library somehow? (my old system is still up on another HD, I haven't zapped it yet).
Thanks in advance,
e

They weren't there for some reason, but I just re-added them by dragging them into iTunes.
I didn't realilze that was un-checked by default though. Thanks!
e

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