New Logic Board - Time Machine wants to create a new backup

This has me stumped. I just got a new hard drive and logic board from Apple. Plugged my external hard drive into my computer, turned time machine off and 'Entered Time Machine' to copy files over back to my computer. All worked as advertised.
Once I had some of my files copied over, I went to turn time machine on. Time Machine informed me that I didn't have enough space on my hard drive (it wants ~94 gigs free and it has 30 free, but it should have been able to delete the oldest backup, free up some space, and we should have moved on). At no point did it ask me if I wanted to reuse the backup or not.
I then wondered if it needed to get further along the backup process before prompting me to reuse the volume or not. So, I excluded like 98% of my hard drive and made the backup ~3 gigs. The backup happened, but now in my Backups.backupdb I have a MyComputer which contains all of my old time machine backups, and a MyComputer_2 which contains this last backup.
I trashed the MyComputer_2 folder and 'Entered Time Machine'. It pulled from the correct place and I saw my backups trailing back into history, but apparently I no longer have permission to view the desktop folder as well as the other 'protected' folders in my backed up home folder. I repaired permissions on the off chance that it would fix it, but it didn't.
Something is clearly broken, do the masses have any suggestions? I found multiple suggestions for how to deal with this under 10.5, but nothing about 10.6.
Thank You,
Zac

zac850 wrote:
But what if I want to reuse my backup? How would I go about doing that? I trashed the time machine plist file (the only one i found was "Macintosh HD/Library/Preferences/com.apple.TimeMachine.plist") in the hopes that after a restart I would be prompted to reuse the backup. No luck.
I don't know why you didn't get the "reuse" prompt, but that wouldn't prevent a new, full backup. You have a new internal HD. Even if it has the same name as the old one, Time Machine knows it's a different disk, so will back up everything on it. You cannot prevent that.
Your first problem is, you didn't transfer things onto the new drive properly (Apple Stores often give bad or misleading advice on that.)
And, you may have corrupted your backups by "trashing" the MyComputer_2 folder. Apple doesn't do a very good job of warning folks: +*never move, change, or delete anything in your backups+* via the Finder.
Try to repair them, per #A5 in Time Machine - Troubleshooting (or use the link in *User Tips* at the top of this forum).
If that works, your best bet is probably to do a full system restore, per #14 in Time Machine - Frequently Asked Questions (or use the link in *User Tips* at the top of this forum).
You obviously had a problem with your Mac; depending on what happened and when, it's possible that damaged your installation of OSX and/or some of your data. If your last backup(s) were done after that started, the corruption may have been backed-up.
If that's a possibility, and you do the restore properly, but it fails, try it again, but select an earlier backup.

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    Guitar Dude 7 wrote:
    Info: My MacBook Pro is the old version. Plus I have not upgraded to Snow Leopard.
    I was running out of hard drive space so I took my MacBook to MacTown where I bought it on Monday night and they put in a 500GB hard drive for me. I asked if it would affect anything such as Time Machine, etc. They said it would not.
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