New MacBook, old hard drive and unsynced iPhone.

Here's the situation. Old MacBook pro died (logic board gave up). I've removed the hard drive and bought an enclosure so that I can plug it in via USB to my new MacBook pro. I am NOT a fan of Migration Assistant. I'm discouraged by the thought of copying unnecessary files. I'd rather drag and drop what I need, and then install applications from scratch. There are so many things I no longer need, anyway. It's spring clean time, after six years. What confuses me is that my iPhone hasn't been synced since my old mac died a month ago. There are new photos and apps on there that I want. I also missed out on updating to iOS 5. I don't want to plug my phone in and get a warning about syncing to a new computer and erasing everything on my phone. 
So what's the tidiest way to go about this? Do I first copy my iTunes library over before syncing my phone? What files do I need exactly? Do I copy my old iphoto library over too? Where are my old apps kept? I would love to plug in my phone and it assumes it's just updating as normal. But the most important thing is that I don't lose my new photos. That trip to Iceland is very important to me!
Please talk me through this!

Not even a suggestion?

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