No timecode while capturing (sometimes)

Hi guys..
Hope someone can help me with this issue..
I have a G5 running FCP 5.1.2 with an AJA IO board connected to my decks (Beta SP and DVC pro), most of the time a need to capture long clips, so I do a capture now on 15 min periods. But sometimes (especially when using the DVCpro Deck a Panasonic AJ-D640) it capture without time code, an then on the next clip it’s do. So I need to do a matchframe with the tape and modyfiy the TC manually to make it match… But with 50 or more clips it’s became insane…
Yesterday It do it (for the first time with the Beta SP) and the problem now is that either if I modify the Timecode on the clip it wouldn’t save it, so nest time I open the project the clip appears with no time code..
I check the quicktime file and doesn’t have a time code track, I try to add it, but doesn’t know how.
Also I know that FCP doesn’t like Panasonic Decks, AJA send me a patch to solve control deck issues… and it works, but still have the same issues with the Timecode.. I was thinking that I happened only with DVCpro, but now seams to do it also in Sony decks..
Could someone can point me in the right direction to solve this issue….
Thanks
JC.

sorry jacalo, i have no experience of the hardware you are using nor the issues you are having.
but fwiw, there is a piece of free software out there, called Sebsky Tools which you might want to try for ading timecode tracks to your QT files

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