No violations after creating Roles

Hi Experts,
So I have kind of a weird situation that Im hoping I can get some help with.  Around a month ago we decided to upgrade GRC from version 10.0 to 10.1 and before the upgrades all SOD simulations were working fine but now for some reason is working on some roles and in others is not working.  So for example if I create a new role with access to SU01 and PFCG, import in to NWBC, run synch jobs, etc. the role show "No Violations".  Now if I run the analysis on a role that was available on the system before upgrade with those same tcodes I see the violations.  I try re-importing all the roles on NWBC, re-generating the Ruleset all the logical connections look ok, running a full synch and nothing so far.
If I create a new role in the backend and run a synch the role gets to NWBC so data is getting from point A to point B, the problem is that some how the ruleset is not creating violations for new roles.  What else can I check?

So I have a few more updates.
So today I did some more testing and this is what I see.  I created a new risk and functions with SU01 and PFCG and after the approval process (risk approval, function approval) I executed the SOD again and the new violations are reflected.  Because of the result of the previous step I decided to re-Upload the rule set and then I got the message “No rule set selected”, I did several more synchs and generations and after a couple of hours it was working but still no luck, the system only shows some of the violations from the rule set.
Current status of the issue is:
1.  Only some violations are visible
2.  If I create a new risk and execute SOD, the new risks are reflected
3.  After re-Uploading ruleset and running synch and generate still only some violations are showing.
any other ideas of wat could be the problem?

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      Memory:          8 GB
      Processor Interconnect Speed:          4.8 GT/s
      Boot ROM Version:          MP51.007F.B03
      SMC Version (system):          1.39f11
      SMC Version (processor tray):          1.39f11
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