Non-hex character in hex string after upgrade to Yosemite

Hi,
When I try to open some of my files I get an error: "Acrobat PDF File Format is having difficulties. Non-hex character in a hex string". I could open the files before.
The only thing I've done since I opened the file last was to upgrade to Yosemite. The error occurs on both my Mac Pro (late 2013) and Mac Book Pro with Yosemite. Unfortunately, I have no access to a Mac with Mavericks and CS6 but I will try to fix one to verify that the file works there.
Affected files  (Created in Illustrator CS6 on Mavericks):
services.ai
visual guidelines v.0.4.pdf
visual guidelines.ai
Tested steps:
Open previous versions of the same file from our repository
Update Illustrator CS6 to latest version
Download Illustrator CC
Tried to Place the file into another file (same error)
Tried to repair file Enable content recovery mode | Illustrator CS2-CS5

Hi svepdesigncenter,
How you are accessing those files from your repository?
There might be chances of getting files corrupted when transferring.
File may have been sent as ascii when it should have been sent as binary or vice versa.
In 99% of transfers it's ALWAYS safest to zip an AI or eps file before sending it anywhere.
Regards,
Sumit Singh

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      OS X 10.10.1 (14B25) - Uptime: 1:33:11
    Disk Information: ℹ️
      ST9500420AS disk0 : (500.11 GB)
      S.M.A.R.T. Status: Verified
      EFI (disk0s1) <not mounted> : 210 MB
      Macintosh HD (disk0s2) / : 499.25 GB (196.94 GB free)
      Recovery HD (disk0s3) <not mounted>  [Recovery]: 650 MB
      HL-DT-ST DVDRW  GS21N 
    USB Information: ℹ️
      Microsoft Microsoft® 2.4GHz Transceiver V1.0
      Apple Inc. Built-in iSight
      Apple Inc. BRCM2046 Hub
      Apple Inc. Bluetooth USB Host Controller
      Apple, Inc. Apple Internal Keyboard / Trackpad
      Apple Computer, Inc. IR Receiver
    Gatekeeper: ℹ️
      Mac App Store and identified developers
    Kernel Extensions: ℹ️
      /Library/StartupItems/Parallels
      [not loaded] com.parallels.kext.Pvsvnic (3.0) [Support]
      /System/Library/Extensions
      [not loaded] com.parallels.kext.ConnectUSB (3.0.0) [Support]
      [not loaded] com.parallels.kext.Pvsnet (3.0) [Support]
      [not loaded] com.parallels.kext.hypervisor (3.0) [Support]
      [not loaded] com.parallels.kext.vmmain (3.0) [Support]
    Startup Items: ℹ️
      HP IO: Path: /Library/StartupItems/HP IO
      Parallels: Path: /Library/StartupItems/Parallels
      ParallelsTransporter: Path: /Library/StartupItems/ParallelsTransporter
      Startup items are obsolete in OS X Yosemite
    Launch Agents: ℹ️
      [not loaded] com.adobe.AAM.Updater-1.0.plist [Support]
      [running] com.adobe.AdobeCreativeCloud.plist [Support]
      [loaded] com.carbonite.launchd.carbonitealerts.plist [Support]
      [running] com.carbonite.launchd.carbonitestatus.plist [Support]
      [loaded] com.google.keystone.agent.plist [Support]
      [loaded] com.hp.help.tocgenerator.plist [Support]
    Launch Daemons: ℹ️
      [loaded] com.adobe.fpsaud.plist [Support]
      [running] com.carbonite.launchd.carbonitedaemon.plist [Support]
      [loaded] com.google.keystone.daemon.plist [Support]
    User Launch Agents: ℹ️
      [loaded] com.adobe.AAM.Updater-1.0.plist [Support]
      [loaded] com.adobe.ARM.[...].plist [Support]
      [loaded] com.adobe.ARM.[...].plist [Support]
    User Login Items: ℹ️
      Citations Application (/Applications/Papers.app/Contents/SharedSupport/Citations.app)
      iTunesHelper UNKNOWNHidden (missing value)
      Time Out Application (/Users/[redacted]/.Trash/Time Out.app)
      AdobeResourceSynchronizer Application (/Applications/Adobe Acrobat 8 Professional/Adobe Acrobat Professional.app/Contents/Support/AdobeResourceSynchronizer.app)
      iTunesHelper UNKNOWN (missing value)
      Caffeine Application (/Applications/Caffeine .app)
      Microsoft AU Daemon Application (/Applications/Microsoft AutoUpdate.app/Contents/MacOS/Microsoft AU Daemon.app)
      Garmin ANT Agent Application (/Applications/Garmin ANT Agent.app)
      Google Drive Application (/Applications/Google Drive.app)
      Stickies Application (/Applications/Stickies.app)
      Dropbox Application (/Applications/Dropbox.app)
      Box Sync Application (/Applications/Box Sync.app)
      EvernoteHelper Application (/Applications/Evernote.app/Contents/Library/LoginItems/EvernoteHelper.app)
      XPSLauncher Application (/Applications/Xerox/PrintingScout/XPSLauncher.app)
    Internet Plug-ins: ℹ️
      o1dbrowserplugin: Version: 5.38.6.0 - SDK 10.8 [Support]
      AmazonMP3DownloaderPlugin1017287: Version: AmazonMP3DownloaderPlugin 1.0.17 [Support]
      Google Earth Web Plug-in: Version: 5.1 [Support]
      Default Browser: Version: 600 - SDK 10.10
      Flip4Mac WMV Plugin: Version: 2.2.1.11  [Support]
      OfficeLiveBrowserPlugin: Version: 12.3.6 [Support]
      AdobeAAMDetect: Version: AdobeAAMDetect 2.0.0.0 - SDK 10.7 [Support]
      AdobePDFViewerNPAPI: Version: 11.0.09 - SDK 10.6 [Support]
      FlashPlayer-10.6: Version: 15.0.0.246 - SDK 10.6 [Support]
      Silverlight: Version: 5.1.30514.0 - SDK 10.6 [Support]
      Flash Player: Version: 15.0.0.246 - SDK 10.6 Mismatch! Adobe recommends 16.0.0.235
      AmazonMP3DownloaderPlugin: Version: AmazonMP3DownloaderPlugin 1.0.17 [Support]
      googletalkbrowserplugin: Version: 5.38.6.0 - SDK 10.8 [Support]
      iPhotoPhotocast: Version: 7.0
      AdobePDFViewer: Version: 11.0.09 - SDK 10.6 [Support]
      GarminGpsControl: Version: 4.0.4.0 Release - SDK 10.6 [Support]
      QuickTime Plugin: Version: 7.7.3
      wkDimdimControl: Version: 1.01
      DirectorShockwave: Version: 11.6.6r636 [Support]
    User internet Plug-ins: ℹ️
      BrowserPlus_2.9.8: Version: 2.9.8 [Support]
      fbplugin_1_0_3: Version: Unknown [Support]
      Move_Media_Player: Version: npmnqmp 071505000006 [Support]
    Safari Extensions: ℹ️
      Extensions: No such file or directory
    3rd Party Preference Panes: ℹ️
      BrowserPlus  [Support]
      Carbonite  [Support]
      Flash Player  [Support]
      Flip4Mac WMV  [Support]
    Time Machine: ℹ️
      Skip System Files: NO
      Auto backup: YES
      Volumes being backed up:
      Macintosh HD: Disk size: 499.25 GB Disk used: 302.31 GB
      Destinations:
      Lottia [Local]
      Total size: 1.00 TB
      Total number of backups: 65
      Oldest backup: 2010-12-28 19:41:55 +0000
      Last backup: 2014-12-03 21:58:08 +0000
      Size of backup disk: Adequate
      Backup size 1.00 TB > (Disk used 302.31 GB X 3)
    Top Processes by CPU: ℹ️
          70% iPhoto
          20% TOCGenerator
          18% WindowServer
          9% Time Out Break
          6% CarboniteDaemon
    Top Processes by Memory: ℹ️
      463 MB iPhoto
      137 MB Mail
      116 MB Google Chrome
      106 MB WindowServer
      99 MB iTunes
    Virtual Memory Information: ℹ️
      114 MB Free RAM
      1.39 GB Active RAM
      1.21 GB Inactive RAM
      857 MB Wired RAM
      6.24 GB Page-ins
      34 MB Page-outs
    Diagnostics Information: ℹ️
      Dec 10, 2014, 09:18:41 AM Self test - passed
      Dec 9, 2014, 03:44:57 PM fontd_2014-12-09-154457_Postelsia.crash
      Dec 9, 2014, 12:12:52 PM CarboniteDaemon_2014-12-09-121252_Postelsia.cpu_resource.diag [Details]
      Dec 8, 2014, 10:27:45 AM CarboniteDaemon_2014-12-08-102745_Postelsia.cpu_resource.diag [Details]
      Dec 7, 2014, 01:04:27 PM CarboniteDaemon_2014-12-07-130427_Postelsia.cpu_resource.diag [Details]

    Also resetting SMC could solve the problem.
    Intel-based Macs: Resetting the System Management Controller (SMC) - Apple Support
    Upgrading RAM till 8GB could also help the system performance.

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