None of the comments...contained in structure tree and other errors

1.  When running the "full check" accessibility report following creation of a PDF from MS Word, I get the following error for every page that has a header and footer:
          None of the comments or other types of annotations on this page are contained in the structure tree.
I've created other PDFs in the same way with similar headers and footers and never had a problem with the headers & footers.  There were no comments or tracked changes or similar in the MS Word document when I converted it.
When I use "find" in the Tags window:
     Artifacts - it "finds" every header & footer
     Umarked Annotations, Unmarked Links:  it finds the "Doc ID:  " text from every footer
     Ummarked Content:  points to each row of text, line, and blank line in headers & footers (individually) of each page
     Unmarked Comment & OCR Suspects:  nothing found
2.  It tags the "Doc ID:  " text in the footer on some pages as an "Inaccessible link" (it's not a link and why only some pages???)
3.  Tab order may be inconsistent with the structure order - I received 3 of these even though I marked every page with "use document structure" (we have found the defaults don't work, so we have to mark every single page - and this particular document is 180 pages long!)
Does anyone have any idea WHY I'm getting these errors?  I'm following our process that has worked successfully on all other documents!
Adobe Acrobat 9 Pro (9.5.1) - No updates available.
Windows XP
Created:  MS Word 2007 using Acrobat add-in; Acrobat ribbon --> Create Adobe PDF tab --> Create PDF

Going to need more information about the certificate and Active Directory. Is the VPN connection secure with TLS for authentication or encryption? If so, where did the certificates comes from? An internal CA or purchased externally?Which servers have the
problem? Just the one server reporting the issue? Which server is it attempt to replicate from?
Mark B. Cooper, President and Founder of PKI Solutions Inc., former Microsoft Senior Engineer and subject matter expert for Microsoft Active Directory Certificate Services (ADCS). Known as “The PKI Guy” at Microsoft for 10 years. Connect with Mark at http://www.pkisolutions.com

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