Not able to remove the BizTalk Application from Admin Console

While removing the application I am getting the below error and after that not able to see any Resources also for the same application.
TITLE: BizTalk Server 2009 Administration Console
Delete of ApplicationNode failed.
ADDITIONAL INFORMATION:
Error while removing application XXXXXX". (mscorlib)
For help, click: http://go.microsoft.com/fwlink/?LinkId=47400&ProdName=Microsoft+BizTalk+Server+2009&ProdVer=3.8.368.0&EvtSrc=Microsoft.BizTalk.ApplicationDeployment&EvtID=RemoveApplicationFailure
Method not found: 'Microsoft.BizTalk.ExplorerOM.BtsCatalogExplorer Microsoft.BizTalk.ExplorerOM.BtsCatalogExplorer.GetBtsCatalogExplorerInstance()'. (mscorlib)

Hi,
the problem here is that your installation is effectively corrupt, in other words the combination of assemblies on the system does not match one of the supported configurations. I hope this is not a production system?
Having said that I think you have taken some repair steps?
The specific error here is that the administration console is not getting matched with the correct version of the dependent assembly. So your first step is find a working BizTalk dev system and determine what the correct versions are. The best way to do
this is to take advantage of the tools associated with the .net Fusion system. See here for a good description:
http://blogs.msdn.com/b/suzcook/archive/2003/05/29/57120.aspx. Also that post is a little old, if you have a .net 4 based system the locations need to be tweaked (but you don't in BTS
2009).
What it will allow you to do is obtain a trace of  where .net looked for assemblies  and where it found the one it used. 
It should be trying to find: microsoft.biztalk.explorerom.dll.  However it takes a bit of time to understand the logs so just because you see a few failures don't worry, you are interested in the one it found.
mark

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