NX6800GT-T2D256E, Power supply and 6-pin connector

My NX6800GT-T2D256E came with a power adapter: 2x 4-pin Molex to a 6-pin connector that goes into the VGA-Card.
I've noticed that I have an identical 6-pin connector directly on my power supply (a Cieftec GPS-400AA-101A)
According to the power supply's manual, it is a PCI power connector, seemingly for powering PCI-express VGA cards.
Of course I want to use that connector, as it seems to be the ideal way of powering the card, but first I compared the pin configuration to make sure it is the same thing - and found a slight difference.
On the Adapter supplied with the card, 1 of the pins is empty (not connected) while on the connector from my power supply it is connected to +12V
Basically the pin configuration looks like this:
 1 4
 2 5
 3 6
On the adapter supplied with the card they are:
1:  +12V
2:  NOT CONNECTED
3:  +12V
4:  Ground
5:  Ground
6:  Ground
On the power supply they are:
1:  +12V
2:  +12V
3:  +12V
4:  Ground
5:  Ground
6:  Ground
Can I safely use the connector from my power supply or could the additional +12V damage my VGA card?

Your PC has a standard ATX power supply and physical sizes will vary slightly.  You might want to measure the dimensions of your power supply.  Normally the standard ATX PSU will measure 5.9" by 5.5" by 3.4".  You don't want to get too far away from the dimensions of your PSU since the HP mini-tower cabinets are very tight inside.  I prefer the modular model PSUs to help with excess cabling issues.  www.newegg.com has many good brands.  Not all PSUs are created equal.  Look at the warranty period, amperage on the 12+ volt bus, specification level, i7 support, efficiency rating etc..
OCZ, Enermax, Corsair and Rosewill are all good brands as is Thermaltake. 
HP DV9700, t9300, Nvidia 8600, 4GB, Crucial C300 128GB SSD
HP Photosmart Premium C309G, HP Photosmart 6520
HP Touchpad, HP Chromebook 11
Custom i7-4770k,Z-87, 8GB, Vertex 3 SSD, Samsung EVO SSD, Corsair HX650,GTX 760
Custom i7-4790k,Z-97, 16GB, Vertex 3 SSD, Plextor M.2 SSD, Samsung EVO SSD, Corsair HX650, GTX 660TI
Windows 7/8 UEFI/Legacy mode, MBR/GPT

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