October 4th update erased user settings

Yesterday's update messed up a lot of my user settings and god knows what happened behind the scene which are not so visible.
here is the detail, after coming back from the restart;
1. I had go through the set up assistant all over again,  icloud log in and computer log in
2. my wallpaper went back to the stock picture
3. launchpad went back to stock arrangement
4. a bunch of setting went back to stock settings including, lock timing, highlight color, panel colour, and font size
5. shows more blue screen
6. applications seems stucked (very short moment but unussual) on initial launch.
7. loged me out of apps like dropbox and googledrive
Does anyone faced the same issue? any fix ? I realised going back in time machine only effect files system, (am i wrong? does it also restores os and apps?)

Yesterday's update messed up a lot of my user settings and god knows what happened behind the scene which are not so visible.
here is the detail, after coming back from the restart;
1. I had go through the set up assistant all over again,  icloud log in and computer log in
2. my wallpaper went back to the stock picture
3. launchpad went back to stock arrangement
4. a bunch of setting went back to stock settings including, lock timing, highlight color, panel colour, and font size
5. shows more blue screen
6. applications seems stucked (very short moment but unussual) on initial launch.
7. loged me out of apps like dropbox and googledrive
Does anyone faced the same issue? any fix ? I realised going back in time machine only effect files system, (am i wrong? does it also restores os and apps?)

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