Odd preview issue with pdf

I have a pdf I created from Quark 7. There are a number of items with .5pt rules or boxes around them (for example, business card sized ads with a half point rule). Some rules show fine and others require me to zoom in very close to see them. If I zoom in at different levels (say 100%, 150%, etc.) I may see the rule on one side only, then at a different zoom level the rule I see disappears and I see one or two of the other sides. Is this a bug of Acrobat? I'm using 9, but have seen this in earlier versions as well. Since I just sent a long document off to a printer that has this occurring, I want to make sure the rule will show and not have to fix the page later on.
Anyone know why this is happening. (I'm viewing PDF on iMacG5, but same thing happens on intel Macbook and my client's older G4.
Jeff

I definitely have Calibri - came with Office for Mac and is the font I have set my "normal" style to use (plus my default e-mail font, etc.). I have checked in FontBook and Calibri is there, no duplicate fonts and I validated the font and it is all fine (regular, italic, bold, bold italic). My Calibri works fine in PDF's because I create a fair number of documents in Word (for Mac) and "print" them to PDF and Calibri is the main font I use.
What is weird is that the document has the font embedded anyway (at least the subset it needs), yet when Adobe Reader displays the document the fonts look nothing like Calibri.
I can open the file fine in Photoshop - but as with Reader, the font it uses is not Calibri.
Also, Preview done snot see the "blocks" where the text should be as text - as I cannot select them with the text cursor but only with the select (image/rectangle) tool. I can't see a way to attach an image to a port here but the blocks I get a like lines of giant black pixels (rectangles the size of a character) where the text should be, some fully black, then fading to lighter greys across the word (some starting black, fading to light grey, others starting light grey building to black, a few all solid black). Sorry for the lousy description.
I have double checked a PDF I created (using Word/Office for Mac) and it had two embedded subset fonts, Calibri and Calibri bold and it displays fine in both Preview and Reader and the font is very different from that Reader/Photoshop show for the problem document. Although in my document the "encoding" was set to "built-in" whilst the problem document has encoding set to "ansi"
Many thanks for your attention to my question.
Regards
Ian
Message was edited by: DeimosL - added a bit more info about the "encoding"
Message was edited by: DeimosL

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