Only new email dissapears

HI,
I get a new email notification noise, the number of the new emails pops up next to the inbox on the left. I click on that box, and there is no new emails in the list and the number disappears. What is going on here? I know I am getting new emails (cuz I'm sending some of them from a seperate comptuer account/email) and where are they going? They are not in the trash or junk folder.
Thanks,
Chris

Using the Finder, go to Home > Library > Mail > this POP account named folder (named by the user name and incoming mail server for the account).
Confirm there is an INBOX.mbox named folder within the account named folder.
In addition, confirm there is not another account named folder with a similar name at the first level within the Mail folder.

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