Optical digital input (S/PDIF) problem (sampling rates)

I have a huge problem with my 2009 iMac's digital input that I didn't run into on my older MacBook running the same OS (10.6.x), and it's driving me nuts!
Basically, I'm trying to record a digital feed from an ADC hooked up between my hand-built tube amps/turntable and my iMac, with the goal being the transfer of some of my LP records to 48/24 LPCM for archiving and editing. The ADC's output rate is fixed at 48000Hz and cannot be changed. My iMac, however, refuses to lock on to the device rate, instead forcing 44.1kHz in the audio/midi setup. In fact, I can't get it to do anything but 44.1kHz on anything I plug in (even my DAC's passthrough) despite the fact that I need to use 48kHz. The audio is correct for a few seconds, then forces back to the wrong rate again. No matter how many times I try, the computer insists on using the wrong sampling rate, which has rendered impossible any hope of using my iMac as an audio recorder.
I've tried setting up an aggregate device, but to no avail. Nothing I do seems to work, and since the problem is with Core Audio, any program used to catch the audio records gibberish. Is there a way to force Core Audio to use 48kHz in the terminal? It's not like the computer can't do it, as I get about 2 or 3 seconds of correct audio when changing the sampling rate manually. I just can't get it to stick!

Seeing the exact same thing here. External digital source is 48kHz, and this Mac Pro Desktop will only stay on that setting very temporarily (for about .10 or .15 seconds) then it reverts back to 44.1kHz. Even if I don't have a signal or even a Toslink cable plugged in to the input.
(I'm surprised you are getting 2 or 3 seconds of correct audio, when I'm getting about 1/10th that before it reverts back to the wrong sample rate. Maybe related to a buffer size option somewhere?)
I have tried every known option to reset or re-configure this, and even to the point of creating a new user, resetting PRAM, resetting SMC, etc. I was going to try upgrading to 10.6, thinking maybe it was a 10.5.x problem, but now I'm not sure that will help.
Had I the choice to set the setting to be 48kHz and lock it in, it should stay on that setting - (even if the chance exists that what I'm getting is not correct.)
More often than not, I know what I'm doing more than Mac OS does, and I want to force it to do what it needs to.
There really needs to be a "do it because I told you so" option for most of the Mac audio configuration system. This automatic "the hardware decided to do something for you" stuff is absolutely horrid for a system that is marketed as "Pro". A real "Pro" system would let me edit the configuration once, with the tool (text editor hopefully) of my choice, rather than attempting (and failing) to automate things.
+1 for another instance of this being "a huge problem" and "it's driving me nuts!"

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