Optimizing removes bookmark destinations

For the past several days, every time I optimize a pdf after merging  several pdf's, it strips the page destination out the bookmarks. I haven't changed any  settings, and in any event don't have the optimizer set to remove any  bookmarks, dead or otherwise. I keep Acrobat up to date, and ran a  repair yesterday with no effect. Any ideas on what might be causing  this, or how to fix it?
Relatedly, for any pdf that  I've combined, the bookmarks Options palette is odd. There is no "set  destination" option. I have to manually click through the properties to  set the page. This isn't a new issue (it's been like that ever since I  switched to 9 Pro), but it is newly annoying in light of the first  issue.
Much obliged.

Bicubic downsampling for images over 150 ppi, JPEG compression. For clean up, "Optimize Page Content" and "Optimize the PDF for Fast Web View" are selected. The files are set to be compatible with 7.x and up. Nothing else is selected (including Discard Objects and Discard User Data).

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