OS 10.9.4 slow to load and display disk folders?

I was wondering if any of you veterans can help me with my headache.  I disabled all the antivirus software, but it's still taking forever to see all the folders and volumes on the desktop.  I did a Etrecheck.  Thank you.
Here are the results:
EtreCheck version: 1.9.12 (48)
Report generated July 21, 2014 at 8:38:56 PM PDT
Hardware Information:
  iMac (27-inch, Late 2012) (Verified)
  iMac - model: iMac13,2
  1 2.9 GHz Intel Core i5 CPU: 4 cores
  24 GB RAM
Video Information:
  NVIDIA GeForce GTX 660M - VRAM: 512 MB
  iMac 2560 x 1440
System Software:
  OS X 10.9.4 (13E28) - Uptime: 0 days 3:22:1
Disk Information:
  APPLE HDD ST1000DM003 disk0 : (1 TB)
  EFI (disk0s1) <not mounted>: 209.7 MB
  Macintosh HD (disk0s2) / [Startup]: 949.35 GB (630.13 GB free)
  Recovery HD (disk0s3) <not mounted>: 650 MB
  BOOTCAMP (disk0s4) /Volumes/BOOTCAMP: 50 GB (3.13 GB free)
USB Information:
  Seagate Backup+ Desk Mac 3 TB
  disk1s1 (disk1s1) <not mounted>: 209.7 MB
  Seagate Backup Plus Drive (disk1s2) /Volumes/Seagate Backup Plus Drive: 3 TB (2.02 TB free)
  VIA Labs, Inc.          USB3.0 Hub           
  VIA Labs, Inc.          USB3.0 Hub           
  VIA Labs, Inc.          USB2.0 Hub           
  VIA Labs, Inc.          USB2.0 Hub           
  FUJITSU ScanSnap S1300
  Fitbit Inc. Fitbit Base Station
  TSSTcorp USB Mass Storage Device
  Apple Inc. FaceTime HD Camera (Built-in)
  Apple Inc. BRCM20702 Hub
  Apple Inc. Bluetooth USB Host Controller
Thunderbolt Information:
  Apple Inc. thunderbolt_bus
Gatekeeper:
  Anywhere
Kernel Extensions:
  [not loaded] com.LaCie.ScsiType00 (1.5.1 - SDK 10.5) Support
  [loaded] com.cisco.kext.acsock (1.1.0 - SDK 10.6) Support
  [not loaded] com.elgato.driver.DontMatchAfaTech (1.1) Support
  [not loaded] com.elgato.driver.DontMatchCinergy450 (1.1) Support
  [not loaded] com.elgato.driver.DontMatchCinergyXS (1.1) Support
  [not loaded] com.elgato.driver.DontMatchEmpia (1.1) Support
  [not loaded] com.elgato.eyetv.ClassicNotSeizeDriver (1.1.2) Support
  [not loaded] com.lacie.driver.mvumi (1.3.12 - SDK 10.9) Support
  [not loaded] com.roxio.TDIXController (2.0) Support
  [loaded] com.seagate.driver.PowSecDriverCore (5.2.3 - SDK 10.4) Support
  [not loaded] com.seagate.driver.PowSecLeafDriver_10_4 (5.2.3 - SDK 10.4) Support
  [loaded] com.seagate.driver.PowSecLeafDriver_10_5 (5.2.3 - SDK 10.5) Support
  [not loaded] com.seagate.driver.SeagateDriveIcons (5.2.3 - SDK 10.4) Support
  [not loaded] com.symantec.kext.SymAPComm (12.2f1 - SDK 10.6) Support
  [loaded] com.symantec.kext.internetSecurity (5.2f1 - SDK 10.6) Support
  [loaded] com.symantec.kext.ips (3.5f1 - SDK 10.6) Support
  [loaded] com.symantec.kext.ndcengine (1.0f2 - SDK 10.6) Support
  [not loaded] com.tomtom.driver.UsbEthernetGadget (1.0.0d1) Support
Startup Items:
  ciscod: Path: /System/Library/StartupItems/ciscod
  MSUService: Path: /Library/StartupItems/MSUService
Launch Daemons:
  [loaded] com.adobe.fpsaud.plist Support
  [running] com.cisco.anyconnect.vpnagentd.plist Support
  [running] com.fitbit.galileod.plist Support
  [loaded] com.google.keystone.daemon.plist Support
  [running] com.intego.BackupManagerPro.daemon.plist Support
  [failed] com.lacie.LaCieDesktopManagerDaemon.plist Support
  [loaded] com.microsoft.office.licensing.helper.plist Support
  [invalid] com.oracle.java.Helper-Tool.plist
  [loaded] com.sharpcast.xfsmond.plist Support
  [loaded] com.symantec.liveupdate.daemon.ondemand.plist Support
  [failed] com.symantec.liveupdate.daemon.plist Support
  [not loaded] com.symantec.sep.migratesettings.plist Support
  [running] com.symantec.sharedsettings.plist Support
  [running] com.symantec.symdaemon.plist Support
  [running] net.openvpn.client.plist Support
Launch Agents:
  [running] com.brother.LOGINserver.plist Support
  [loaded] com.cisco.anyconnect.gui.plist Support
  [loaded] com.google.keystone.agent.plist Support
  [loaded] com.intego.backupmanagerpro.agent.plist Support
  [failed] com.lacie.LaCieDesktopManagerAgent.plist Support
  [invalid] com.oracle.java.Java-Updater.plist
  [running] com.symantec.uiagent.application.plist Support
User Launch Agents:
  [loaded] com.adobe.ARM.[...].plist Support
  [failed] com.apple.SafariBookmarksSyncer.plist
  [loaded] com.macpaw.CleanMyMac2Helper.diskSpaceWatcher.plist Support
  [loaded] com.macpaw.CleanMyMac2Helper.scheduledScan.plist Support
  [loaded] com.macpaw.CleanMyMac2Helper.trashWatcher.plist Support
User Login Items:
  Skype
  ScanSnap Manager
  EyeTV Helper
  AdobeResourceSynchronizer
  Google Drive
  AdobeResourceSynchronizer
  Dropbox
  Fitbit Connect Menubar Helper
  Amazon Cloud Drive
  Boingo Wi-Finder
  SugarSync
  PandaPow
  InstUtilLaunch
Internet Plug-ins:
  o1dbrowserplugin: Version: 5.4.2.18903 Support
  Google Earth Web Plug-in: Version: 6.0 Support
  Default Browser: Version: 537 - SDK 10.9
  Flip4Mac WMV Plugin: Version: 2.3.2.6 Support
  OfficeLiveBrowserPlugin: Version: 12.3.6 Support
  AdobePDFViewerNPAPI: Version: 10.1.9 Support
  FlashPlayer-10.6: Version: 14.0.0.145 - SDK 10.6 Support
  Silverlight: Version: 3.0.50106.0 Support
  Flash Player: Version: 14.0.0.145 - SDK 10.6 Support
  iPhotoPhotocast: Version: 7.0 - SDK 10.8
  googletalkbrowserplugin: Version: 5.4.2.18903 Support
  QuickTime Plugin: Version: 7.7.3
  AdobePDFViewer: Version: 10.1.9 Support
  SharePointBrowserPlugin: Version: 14.4.1 - SDK 10.6 Support
  JavaAppletPlugin: Version: 15.0.0 - SDK 10.7 Check version
Safari Extensions:
  Open in Internet Explorer: Version: 1.0
Audio Plug-ins:
  BluetoothAudioPlugIn: Version: 1.0 - SDK 10.9
  AirPlay: Version: 2.0 - SDK 10.9
  AppleAVBAudio: Version: 203.2 - SDK 10.9
  iSightAudio: Version: 7.7.3 - SDK 10.9
iTunes Plug-ins:
  Quartz Composer Visualizer: Version: 1.4 - SDK 10.9
User Internet Plug-ins:
  WebEx: Version: 1.0 Support
  CitrixOnlineWebDeploymentPlugin: Version: 1.0.94 Support
  Stamps.com: Version: 1.1.12 Support
  aliedit: Version: 1.0.0.5 - SDK 10.7 Support
3rd Party Preference Panes:
  Flash Player  Support
  Flip4Mac WMV  Support
  FUSE for OS X (OSXFUSE)  Support
  Symantec QuickMenu  Support
Time Machine:
  Skip System Files: NO
  Mobile backups: OFF
  Auto backup: YES
  Volumes being backed up:
  Macintosh HD: Disk size: 884.15 GB Disk used: 297.29 GB
  Destinations:
  Data [Network] (Last used)
  Total size: 2
  Total number of backups: 99
  Oldest backup: 2012-11-25 07:47:32 +0000
  Last backup: 2014-07-22 01:03:25 +0000
  Size of backup disk: Adequate
  Backup size 2  > (Disk used 297.29 GB X 3)
  Time Machine details may not be accurate.
  All volumes being backed up may not be listed.
Top Processes by CPU:
      5% backupd
      2% diskimages-helper
      2% WindowServer
      0% fontd
      0% Fitbit Connect Menubar Helper
Top Processes by Memory:
  492 MB mds_stores
  295 MB Mail
  221 MB SymDaemon
  221 MB WindowServer
  197 MB com.apple.IconServicesAgent
Virtual Memory Information:
  18.19 GB Free RAM
  3.68 GB Active RAM
  511 MB Inactive RAM
  1.63 GB Wired RAM
  600 MB Page-ins
  0 B Page-outs
Message was edited by: aghoo

Thanks Linc and John.  This is what I did (sort of combining both of your suggestions).
1.  I manually removed (as much as I can) MacKeeper and CleanmyMac (both trial versions).
2.  Followed the steps and started in Safe Mode, and removed all Login Items from User.
3.  Ran Disk Utility to repair permissions and disk.
4.  Then started in both Safe and Normal modes.
Here is what I have discovered:
1.  In Normal mode, it is definitely faster than ever, but the one problems still lingers.
2.  However, in both Safe and Normal modes, it takes approximately 36 seconds from the time the Desktop screen appears and the time the HD Volume and other Desktop folders appear on Desktop.  (There are only a few files on Desktop.)
3.  When opening Application folders, the generic icons of the applications appear first before the customized icons replace the generic after about 2 seconds.
4.  Files do not immediately appear after opening a folder.  (But afterwards, the files appear quickly when reopening a folder.)
I ran Etrcheck again.  Below is the results.  What do you think the problem is?
Thank you.
EtreCheck version: 1.9.12 (48)
Report generated July 24, 2014 at 2:28:45 PM PDT
Hardware Information:
  iMac (27-inch, Late 2012) (Verified)
  EtreCheck version: 1.9.12 (48)
Report generated July 24, 2014 at 2:28:45 PM PDT
Hardware Information:
  iMac (27-inch, Late 2012) (Verified)
  iMa1 2.9 GHz Intel Core i5 CPU: 4 cores
  24 GB RAM
Video Information:
  NVIDIA GeForce GTX 660M - VRAM: 512 MB
  iMac 2560 x 1440
System Software:
  OS X 10.9.4 (13E28) - Uptime: 0 days 0:4:54
Disk Information:
  APPLE HDD ST1000DM003 disk0 : (1 TB)
  EFI (disk0s1) <not mounted>: 209.7 MB
  Macintosh HD (disk0s2) / [Startup]: 949.35 GB (630.54 GB free)
  Recovery HD (disk0s3) <not mounted>: 650 MB
  BOOTCAMP (disk0s4) /Volumes/BOOTCAMP: 50 GB (3.13 GB free)
USB Information:
  Seagate Backup+ Desk Mac 3 TB
  disk1s1 (disk1s1) <not mounted>: 209.7 MB
  Seagate Backup Plus Drive (disk1s2) /Volumes/Seagate Backup Plus Drive: 3 TB (2.02 TB free)
  VIA Labs, Inc.          USB3.0 Hub             
  VIA Labs, Inc.          USB3.0 Hub             
  VIA Labs, Inc.          USB2.0 Hub             
  VIA Labs, Inc.          USB2.0 Hub             
  FUJITSU ScanSnap S1300
  Fitbit Inc. Fitbit Base Station
  Apple Inc. BRCM20702 Hub
  Apple Inc. Bluetooth USB Host Controller
  Apple Inc. FaceTime HD Camera (Built-in)
Thunderbolt Information:
  Apple Inc. thunderbolt_bus
Gatekeeper:
  Mac App Store
Kernel Extensions:
  [not loaded] com.LaCie.ScsiType00 (1.5.1 - SDK 10.5) Support
  [loaded] com.cisco.kext.acsock (1.1.0 - SDK 10.6) Support
  [not loaded] com.elgato.driver.DontMatchAfaTech (1.1) Support
  [not loaded] com.elgato.driver.DontMatchCinergy450 (1.1) Support
  [not loaded] com.elgato.driver.DontMatchCinergyXS (1.1) Support
  [not loaded] com.elgato.driver.DontMatchEmpia (1.1) Support
  [not loaded] com.elgato.eyetv.ClassicNotSeizeDriver (1.1.2) Support
  [not loaded] com.lacie.driver.mvumi (1.3.12 - SDK 10.9) Support
  [not loaded] com.roxio.TDIXController (2.0) Support
  [loaded] com.seagate.driver.PowSecDriverCore (5.2.3 - SDK 10.4) Support
  [not loaded] com.seagate.driver.PowSecLeafDriver_10_4 (5.2.3 - SDK 10.4) Support
  [loaded] com.seagate.driver.PowSecLeafDriver_10_5 (5.2.3 - SDK 10.5) Support
  [not loaded] com.seagate.driver.SeagateDriveIcons (5.2.3 - SDK 10.4) Support
  [not loaded] com.symantec.kext.SymAPComm (12.2f1 - SDK 10.6) Support
  [loaded] com.symantec.kext.internetSecurity (5.2f1 - SDK 10.6) Support
  [loaded] com.symantec.kext.ips (3.5f1 - SDK 10.6) Support
  [loaded] com.symantec.kext.ndcengine (1.0f2 - SDK 10.6) Support
  [not loaded] com.tomtom.driver.UsbEthernetGadget (1.0.0d1) Support
Startup Items:
  ciscod: Path: /System/Library/StartupItems/ciscod
  MSUService: Path: /Library/StartupItems/MSUService
Launch Daemons:
  [loaded] com.adobe.fpsaud.plist Support
  [running] com.cisco.anyconnect.vpnagentd.plist Support
  [running] com.fitbit.galileod.plist Support
  [loaded] com.google.keystone.daemon.plist Support
  [running] com.intego.BackupManagerPro.daemon.plist Support
  [failed] com.lacie.LaCieDesktopManagerDaemon.plist Support
  [loaded] com.microsoft.office.licensing.helper.plist Support
  [invalid] com.oracle.java.Helper-Tool.plist
  [loaded] com.sharpcast.xfsmond.plist Support
  [loaded] com.symantec.liveupdate.daemon.ondemand.plist Support
  [failed] com.symantec.liveupdate.daemon.plist Support
  [not loaded] com.symantec.sep.migratesettings.plist Support
  [running] com.symantec.sharedsettings.plist Support
  [running] com.symantec.symdaemon.plist Support
  [running] net.openvpn.client.plist Support
Launch Agents:
  [running] com.brother.LOGINserver.plist Support
  [loaded] com.cisco.anyconnect.gui.plist Support
  [loaded] com.google.keystone.agent.plist Support
  [loaded] com.intego.backupmanagerpro.agent.plist Support
  [failed] com.lacie.LaCieDesktopManagerAgent.plist Support
  [invalid] com.oracle.java.Java-Updater.plist
  [running] com.symantec.uiagent.application.plist Support
User Launch Agents:
  [loaded] com.adobe.ARM.[...].plist Support
User Login Items:
  None
Internet Plug-ins:
  o1dbrowserplugin: Version: 5.4.2.18903 Support
  Google Earth Web Plug-in: Version: 6.0 Support
  Default Browser: Version: 537 - SDK 10.9
  Flip4Mac WMV Plugin: Version: 2.3.2.6 Support
  OfficeLiveBrowserPlugin: Version: 12.3.6 Support
  AdobePDFViewerNPAPI: Version: 10.1.9 Support
  FlashPlayer-10.6: Version: 14.0.0.145 - SDK 10.6 Support
  Silverlight: Version: 3.0.50106.0 Support
  Flash Player: Version: 14.0.0.145 - SDK 10.6 Support
  iPhotoPhotocast: Version: 7.0 - SDK 10.8
  googletalkbrowserplugin: Version: 5.4.2.18903 Support
  QuickTime Plugin: Version: 7.7.3
  AdobePDFViewer: Version: 10.1.9 Support
  SharePointBrowserPlugin: Version: 14.4.3 - SDK 10.6 Support
  JavaAppletPlugin: Version: 15.0.0 - SDK 10.7 Check version
Safari Extensions:
  Open in Internet Explorer: Version: 1.0
Audio Plug-ins:
  BluetoothAudioPlugIn: Version: 1.0 - SDK 10.9
  AirPlay: Version: 2.0 - SDK 10.9
  AppleAVBAudio: Version: 203.2 - SDK 10.9
  iSightAudio: Version: 7.7.3 - SDK 10.9
iTunes Plug-ins:
  Quartz Composer Visualizer: Version: 1.4 - SDK 10.9
User Internet Plug-ins:
  WebEx: Version: 1.0 Support
  CitrixOnlineWebDeploymentPlugin: Version: 1.0.94 Support
  Stamps.com: Version: 1.1.12 Support
  aliedit: Version: 1.0.0.5 - SDK 10.7 Support
3rd Party Preference Panes:
  Flash Player  Support
  Flip4Mac WMV  Support
  FUSE for OS X (OSXFUSE)  Support
  Symantec QuickMenu  Support
Time Machine:
  Skip System Files: NO
  Mobile backups: OFF
  Auto backup: YES
  Volumes being backed up:
  Macintosh HD: Disk size: 884.15 GB Disk used: 296.91 GB
  Destinations:
  Data [Network] (Last used)
  Total size: 2 
  Total number of backups: 95
  Oldest backup: 2012-11-25 07:47:32 +0000
  Last backup: 2014-07-24 20:07:10 +0000
  Size of backup disk: Adequate
  Backup size 2  > (Disk used 296.91 GB X 3)
  Time Machine details may not be accurate.
  All volumes being backed up may not be listed.
Top Processes by CPU:
      37% Finder
      1% WindowServer
      0% fontd
      0% hidd
      0% USBserver
Top Processes by Memory:
  246 MB mds_stores
  246 MB SymDaemon
  197 MB com.apple.IconServicesAgent
  123 MB Finder
  123 MB WindowServer
Virtual Memory Information:
  19.26 GB Free RAM
  3.01 GB Active RAM
  177 MB Inactive RAM
  1.56 GB Wired RAM
  293 MB Page-ins
  0 B Page-outs

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