P35 Neo2 BIOS Settings to run Dual Boot SATA and IDE HD's

Hi,
I was having intermittent problems with a Gigeabyte so upgraded M/B.
I have an IDE "caddy" with 2 Dual boot HD's (Linux Grub booting XP on sda1 and Fedora9 on sda2), and had no problems with either HD's on old M/B.
The old M/B also had  SATA sockets which I installed a 250GB drive as my main setup.  Dual boot again with same setup.  I set the SATA to "auto" and it detected and ran when no IDE caddy was inserted.
Everything ran OK but I had very intermittent CRC failures that I could not isolate, so I upgrade 2 days ago.
Without inserting any IDE drives I can boot the SATA drive OK into Linux OK  (it also detects an ext3 partition on a seperate /backup partition so the IDE interface works).
If I now try and boot the XP on my SATA drive,  I get the dreaded blue screen. 
I assume this is due to me having XP installed without the AHCI support as detailed in other (long) thread showing how to overcome this problem!?
I would also like to know if and I can just boot from my IDE drive (with no SATA's connected),   because even though it seems to detect the PATA HD OK,  I cannot get it to boot from either of them!  I know these HD's have not changed as I have checked both of them on the SATA OS and both Logical volumes are still there and the relevant boot flags are both set.
Even though I have a bit of a complex setup,  this may well be a very simple case of BIOS settings (sorry).
FYI:
I have a A7345 IMS V1.8 012408 BIOS and my two IDE drives are both dual boot with XP on the first partition.
Both Linux partitions are formatted using Logical Volume Management  (LVM).
Thanks for your time
Any help/pointers would be appreciated as I am not absolutely sure that the M/B is functional or not.
   

Thanks for the info,  I am now a bit clearer as to what is happening!
I removed known good IDE HD from caddie and put it directly on the IDE cable (after removing the old non LVM linux IDE disk that was on it).
The newly connected HD was initialized OK and I can see both SAT and IDE disks listed with F11.
On trying to boot from the IDE,  it starts up and decompresses the image,  BUT cannot seem to find the LVM Volume group 03 (which is where my /boot partition is located).
It then gives in and after a while,  boots back to the SATA OK (where the bootloader is also inside the LVM so I can't see why the LVM IDE disk is a problem but the LVM SATA boots OK).
I do remember (late last night) trying with just IDE drive and of course it just hung because it did not have any alternative to boot!
Any other observations/suggestions?
Apologies its late here and I will not be back for a few hours!
Regards

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