P67A-G45 (B3) fan speed keep dropping to 0 rpm

I just got this motherboard (P67A-G45 (B3)) for a month. Just only today, I notice the CPU fan speed being detect keep on going to 0 rpm every 10-15 secs. It goes to 1800 rpm then after like 10 secs, you can it become 0 just for a second. Then it goes back to 1800 rpm.
When I turn view this under control center II in windows 7, it also shows this symptom and alarm get triggered.
I did not do any over clocking. I am using Cooler Master Hyper N520 heatsink. The fan for this heatsink only have 3 pin which I doubt is the reason for the board to detect 0 rpm. Anyone having similar problem with this motherboard or HSF?

My parts for 2 units of 3-pin fan cable arrived. After some modding, I connected it to replace the existing 3-pin Y-cable. Partially works. When I check in the BIOS level, I can see the speed drop occasionally to around 500rpm. However, when I boot up to windows and using speedfan, below is what I get.
Still getting speed drop to around 500rpm but it happen less frequent and at least not 0 rpm. I am okay with this. As I don't have another motherboard to test. Plus I really do not want to take out the HSF again as it is a lot of work. Need to take out the whole motherboard for that.
edit:
I switch between fan1 and fan2. Take note fan2 is sysfan1 on the motherboard. I plug the HSF cable into fan2 and for fan1 I plug the PSU fan. So this time I see fan2 speed drop to 500rpm every 8 minutes.
So conclusion, problem is with the HSF. Cable? Or the Fans? And why does changing the cable fixes the problem "partially"?

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