Part of path lost when importing autogenerated files

Hope someone can help as can't find anything on the forum about this.
Have two Framemaker 8 books, one of which contains all the files for a future publication, including LOT, LOF and IX.  This is the full publication but most of it is still heavily in draft.  The second book represents the first release of the publication and has only a small subset of agreed content.  The idea is that the publication will grow in time.
The second book is in a subdirectory below the directory containing the first book and the full set of files.  It has its own LOT,LOF and IX.  It also links up to a few of the files above, the ones that are in the first release. The LOT, LOF and IX contain contain references only to these few content files. Have done it this way rather than put everything in one directory, as there will be a number of subsets, with multiple PDFs produced for review from each before the finalised PDF containing the current content to be released at any one time, and don't want them all in the same directory with the management problems that would introduce, and risk of people selecting the wrong version of a LOT, LOF etc. The content files with the actual text in are not duplicated in this subdirectory; the book just links to them in the directory above itself.
All was well on one PC but needed to work on a second also. This second one has a different directory structure and it isn't possible to change it because of the different policies in place.  So copied the main directory and the other subdirectory beneath to the new PC.  All appeared OK; the lower level book found the files above etc.
To clarify the structure on the second PC is this:
\dir0\dir1\dir2\Content directory - place where the first book plus the preface, glossary/index and the other files in the draft book - the main body
..dir0\dir1\dir2\Content directory\dirA - place where the second book and LOT, LOF, IX are for the book to be published first (the .. represents some other directories from the root)
(On the first PC, it was \dir0\dir1\Content directory\ and dir0\dir1\Content directory\dir A - and this is the shorter path from the root)
When trying to generate the PDF on the second realised something had gone wrong and then found that the problem began in FMkr. The symptom is this:
The LOT, LOF and IX autogenerated files are fine within the book, their links can be clicked and they go to the source files (in the directory above).  BUT these files aren't part of the actual publication.  The LOT and LOF are embedded in a Preface (one of the files in level above) and the IX is embedded in a Glossary and Index file (ditto). When these are imported into the Preface or Glossary as appropriate, whether by reference or by actually including the file, the result is the same - the links become non clickable and an error is saying that the file can't be found. The path is partly truncated - it excludes the directory where the files actually are.
So for a link to the Introduction.fm file, FMkr says it is looking for it as ..dir0\dir1\dir2\Introduction.fm and not ..dir0\dir1\dir2\Content directory\Introduction.fm where it actually is.
This occurs even if the whole structure is copied elsewhere to a place higher in the hierarchy. It isn't possible to reproduce the structure on the first PC because of the configuration of the second PC.  Have tried taking the LOT etc. out of the second book then regenerating them from scratch - they are fine, the links in them are fine, but when imported into the other files, the links miss out the directory which actually holds the source files where the links point to. Must emphasise this did not happen on the first PC.
Any ideas gratefully received.

Thanks Sheila, have now overcome my problem with editing the post (duh!)
Hope the below is clear enough as cannot send an actual screen shot. Have discovered that the number of directories above in path is a red herring because the problem now happens back on the original pc when the book and files are copied back to it.
Have tried creating a test book with only the index, glossary/index and one content file linked from directory above (i.e. test book at dir c level) and it is OK in the autogenerated index but then does the same truncation when the index is imported into glossary/index, i.e. looks for the source file in dir A.  If the source file is copied into the test book directory, the file removed from book and then the local copy added back in and the book updated/import redone, the links work. so it will find it if the source files are in the same directory.  However, this always worked before with lots of test runs and a few real reviews too.
Subject: FrameMaker General Discussion Part of path lost when importing autogenerated files
It would be really helpful if you might do a screenshot  of the File Manager hierarchy of folders and insert them into your posting, maybe use callouts to annotate the various significant levels -- a visual would really, really make it much easier to interpret what you're describing.
>
Sorry, not coming out very clear compared to viewed on PC. Directories are A, B, C - Dir A caption "The Directory above the content directory. Links in the subset book in Directory C look in here after they are imported into other files in the subset book"
Directory B says "Directory B, the content directory, with introduction, glossary/index and other content files, plus main book, main index, main LOT, LOF. Some of the content files in here are also linked to from the subset book in Directory C"
Directory C says "Directory C containing the subset book with its own index, LOT, LOF, plus links to introduction, glossary/index and a couple of other files in Directory B.  The links to files in Dir B work in the autogenerated LOT, LOF etc, but not when imported into content files (linked files in directory B) although this used to work. They now look for the content files in Directory A instead"
Hope that makes it clearer.

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    The Adobe Creative Cloud is connected to the Internet and can download other Adobe applications, however Photoshop Elements 6 shows a "No Internet connection" message when I try to update it. Adobe Acrobat Reader updates fine. I have also tried to import the file in with Root enabled, but to no avail.
    Crash report for AE below:
    Process:         After Effects [2898]
    Path:            /Applications/Adobe After Effects CC 2014/Adobe After Effects CC 2014.app/Contents/MacOS/After Effects
    Identifier:      com.adobe.AfterEffects
    Version:         13.0.2 (13.0.2)
    Code Type:       X86-64 (Native)
    Parent Process:  launchd [275]
    Responsible:     After Effects [2898]
    User ID:         504
    Date/Time:       2014-08-19 10:51:10.888 -0400
    OS Version:      Mac OS X 10.9.4 (13E28)
    Report Version:  11
    Anonymous UUID:  49A8B52B-C8C4-7C01-564E-1B8E1298696F
    Crashed Thread:  0  Dispatch queue: com.apple.main-thread
    Exception Type:  EXC_BAD_ACCESS (SIGSEGV)
    Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000010
    VM Regions Near 0x10:
    -->
        __TEXT                 0000000100000000-0000000100004000 [   16K] r-x/rwx SM=COW  /Applications/Adobe After Effects CC 2014/Adobe After Effects CC 2014.app/Contents/MacOS/After Effects
    Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
    0   com.adobe.psl                 0x000000010e6f45c9 0x10e485000 + 2553289
    1   com.adobe.psl                 0x000000010e67bb2e 0x10e485000 + 2059054
    2   com.adobe.psl                 0x000000010e8c636d 0x10e485000 + 4461421
    3   com.adobe.psl                 0x000000010e71f469 0x10e485000 + 2729065
    4   com.adobe.psl                 0x000000010e749fa0 0x10e485000 + 2903968
    5   com.adobe.psl                 0x000000010e816595 0x10e485000 + 3741077
    6   com.adobe.psl                 0x000000010e72d261 0x10e485000 + 2785889
    7   com.adobe.psl                 0x000000010ea3026f 0x10e485000 + 5943919
    8   com.adobe.psl                 0x000000010ea2d6ed 0x10e485000 + 5932781
    9   com.adobe.psl                 0x000000010ea344f4 0x10e485000 + 5960948
    10  com.adobe.psl                 0x000000010ea2a9c4 PSLGetImageDuration + 36
    11  PIN.dylib                     0x00000001021d4f55 AdobePSL::Image::GetDuration() const + 53
    12  PIN.dylib                     0x000000010212a064 D_PS3p_InitPSL + 4644
    13  PIN.dylib                     0x0000000102128b4e D_PS3_NewSeqSpecFromFile + 1166
    14  PIN.dylib                     0x000000010207a95c PINp_NewSeqSpecFromFileSpec + 6188
    15  PIN.dylib                     0x0000000102079c2a PINp_NewSeqSpecFromFileSpec + 2810
    16  PIN.dylib                     0x000000010207e7ee PIN_NewSeqSpecFromFileSpecH + 270
    17  com.adobe.AfterEffectsLib.framework 0x0000000100227411 Egg_PINImportFileCBX(FILE_Spec*, AE_FIM_ImportOptionsTag*, int, BEE_Item*, AE_FIM_RefconTag*, PIN_NewSeqSpecInfo*) + 721
    18  com.adobe.AfterEffectsLib.framework 0x0000000100227a9e Egg_PINImportFileCB(FILE_Spec*, AE_FIM_ImportOptionsTag*, int, BEE_Item*, AE_FIM_RefconTag*) + 446
    19  com.adobe.AfterEffectsLib.framework 0x00000001002cabb9 FIM_DoImport(FIM_ImportSpec*, BEE_Item*, int, BEE_Item**, int) + 1241
    20  com.adobe.AfterEffectsLib.framework 0x00000001007128d8 CProject::DoCommand(int) + 7640
    21  com.adobe.AfterEffectsLib.framework 0x000000010070b93e CPOutlinePano::HandleDoubleClick(ae::egg::MouseEvent const&) + 302
    22  com.adobe.AfterEffectsLib.framework 0x000000010032aaed CView::DispatchMouseEvent(ae::egg::MouseEvent const&) + 349
    23  com.adobe.AfterEffectsLib.framework 0x000000010032aa12 CView::DispatchMouseEvent(ae::egg::MouseEvent const&) + 130
    24  com.adobe.AfterEffectsLib.framework 0x000000010032aa12 CView::DispatchMouseEvent(ae::egg::MouseEvent const&) + 130
    25  com.adobe.AfterEffectsLib.framework 0x000000010035e334 CDirTabPanel::UI_DoMouseEvent(dvaui::ui::UI_Node*, dvaui::ui::MouseEvent const&) + 820
    26  com.adobe.AfterEffectsLib.framework 0x00000001006d7634 non-virtual thunk to COutlineDir::UI_DoMouseEvent(dvaui::ui::UI_Node*, dvaui::ui::MouseEvent const&) + 52
    27  com.adobe.dvaui.framework     0x0000000103a4e1fc dvaui::ui::UI_Node::UI_DoPointerEvent(dvaui::ui::UI_Node*, dvaui::ui::PointerEvent const&) + 44
    28  com.adobe.dvaui.framework     0x0000000103a4a533 dvaui::ui::UI_Node::UI_DispatchPointerEventToLeaf(dvaui::ui::UI_Node*, dvaui::ui::UI_Node*, dvaui::ui::PointerEvent const&) + 243
    29  com.adobe.dvaui.framework     0x0000000103a4a040 dvaui::ui::UI_Node::DispatchPointerEvent::operator()(dvaui::ui::UI_Node*, dvaui::ui::UI_Node*, dvacore::geom::PointT<float> const&) const + 128
    30  com.adobe.dvaui.framework     0x0000000103a518da std::pair<bool, dvaui::ui::UI_Node*> dvaui::ui::UI_Node::UI_DispatchPointerEventTowardsLeafT<dvaui::ui::UI_Node::DispatchPoint erEvent>(dvaui::ui::UI_Node::DispatchPointerEvent&, dvacore::geom::PointT<float> const&, bool) + 154
    31  com.adobe.dvaui.framework     0x0000000103a518c2 std::pair<bool, dvaui::ui::UI_Node*> dvaui::ui::UI_Node::UI_DispatchPointerEventTowardsLeafT<dvaui::ui::UI_Node::DispatchPoint erEvent>(dvaui::ui::UI_Node::DispatchPointerEvent&, dvacore::geom::PointT<float> const&, bool) + 130
    32  com.adobe.dvaui.framework     0x0000000103a518c2 std::pair<bool, dvaui::ui::UI_Node*> dvaui::ui::UI_Node::UI_DispatchPointerEventTowardsLeafT<dvaui::ui::UI_Node::DispatchPoint erEvent>(dvaui::ui::UI_Node::DispatchPointerEvent&, dvacore::geom::PointT<float> const&, bool) + 130
    33  com.adobe.dvaui.framework     0x0000000103a518c2 std::pair<bool, dvaui::ui::UI_Node*> dvaui::ui::UI_Node::UI_DispatchPointerEventTowardsLeafT<dvaui::ui::UI_Node::DispatchPoint erEvent>(dvaui::ui::UI_Node::DispatchPointerEvent&, dvacore::geom::PointT<float> const&, bool) + 130
    34  com.adobe.dvaui.framework     0x0000000103a49201 dvaui::ui::UI_Node::UI_DispatchPointerEventTowardsLeaf(dvaui::ui::PointerEvent const&, bool) + 65
    35  com.adobe.dvaui.framework     0x0000000103a488c2 dvaui::ui::UI_Node::UI_DispatchPointerEventToTarget(dvaui::ui::UI_Node*, dvaui::ui::PointerEvent const&, bool) + 194
    36  com.adobe.dvaui.framework     0x0000000103a48752 dvaui::ui::UI_Node::UI_DispatchPointerEvent(dvaui::ui::PointerEvent const&, bool) + 66
    37  com.adobe.dvaui.framework     0x0000000103ac4f40 dvaui::ui::OS_View::UI_DispatchPlatformMouseEvent(dvaui::ui::MouseEvent const&, bool) + 608
    38  com.adobe.dvaui.framework     0x0000000103ac4ab8 dvaui::ui::OS_View::UI_DispatchPlatformMouseClickEvent(dvaui::ui::OS_Event const&) + 600
    39  com.adobe.dvaui.framework     0x0000000103ac2e69 dvaui::ui::OS_View::UI_DispatchEvent(dvaui::ui::OS_Event*) + 121
    40  com.adobe.dvaui.framework     0x0000000103ac2dc6 dvaui::ui::OS_View::UI_HandleOSEvent(dvaui::ui::OS_Event*) + 22
    41  com.adobe.dvaui.framework     0x0000000103ac4549 dvaui::ui::OS_View::UI_HandlePlatformEvent(NSEvent*) + 57
    42  com.adobe.dvacore.framework   0x000000010330340c int dvacore::config::ErrorManager::ExecuteFunction<void>(boost::function0<void>*, void*) + 28
    43  com.adobe.AfterEffectsLib.framework 0x0000000100282bf4 Get_NAB_BUILD_SYNC_SETTINGS_HIDDEN() + 1780
    44  com.adobe.dvacore.framework   0x0000000103303558 void dvacore::config::ErrorManager::ExecuteFunctionWithTopLevelExceptionHandler<void>(boost::f unction0<void>, bool*) + 136
    45  com.adobe.dvacore.framework   0x00000001033048f5 void dvacore::config::ExecuteTopLevelFunction<void>(boost::function0<void>, bool*) + 165
    46  com.adobe.dvaui.framework     0x0000000103acf81a -[DVAMacContainerView mouseUp:] + 122
    47  com.apple.AppKit               0x00007fff8c33a145 -[NSWindow sendEvent:] + 781
    48  com.apple.AppKit               0x00007fff8c2db5d4 -[NSApplication sendEvent:] + 2021
    49  com.adobe.dvaui.framework     0x0000000103ac8d6b -[DVAMacApplication sendEvent:] + 603
    50  com.adobe.AfterEffectsLib.framework 0x00000001000abfec GetAECocoaApplication() + 1404
    51  com.apple.AppKit               0x00007fff8c12b9f9 -[NSApplication run] + 646
    52  com.adobe.AfterEffectsLib.framework 0x00000001003131e1 CApplication::Run() + 65
    53  com.adobe.AfterEffectsLib.framework 0x0000000100281bce MainMain(bool, bool, bool, bool, bool, bool, unsigned short const*, bool, void**, int, int, int) + 894
    54  com.adobe.AfterEffectsLib.framework 0x000000010028181b EggMain(bool, bool, bool, bool, bool, bool, unsigned short const*, bool, int) + 59
    55  com.adobe.AfterEffects         0x000000010000333e main + 1838
    56  com.adobe.AfterEffects         0x0000000100002c04 start + 52
    Thread 1:: Dispatch queue: com.apple.libdispatch-manager
    0   libsystem_kernel.dylib         0x00007fff8ec26662 kevent64 + 10
    1   libdispatch.dylib             0x00007fff82cfd421 _dispatch_mgr_invoke + 239
    2   libdispatch.dylib             0x00007fff82cfd136 _dispatch_mgr_thread + 52
    Thread 2:
    0   libsystem_kernel.dylib         0x00007fff8ec25e6a __workq_kernreturn + 10
    1   libsystem_pthread.dylib       0x00007fff8cdfcf08 _pthread_wqthread + 330
    2   libsystem_pthread.dylib       0x00007fff8cdfffb9 start_wqthread + 13
    Thread 3:
    0   libsystem_kernel.dylib         0x00007fff8ec25e6a __workq_kernreturn + 10
    1   libsystem_pthread.dylib       0x00007fff8cdfcf08 _pthread_wqthread + 330
    2   libsystem_pthread.dylib       0x00007fff8cdfffb9 start_wqthread + 13
    [etc. etc.]
    Thanks,
    Tom

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