PDF name didn't match the file-attributes

Hello Community,
I imported some PDF-Files via iTunes (Win7) on my Ipad. I also edited the file information and the pdf-name (in iTunes & win7) as required. The synchronisation worked perfect, after opening the pdf-file in iBooks the name changed. Is there any chance to change this name in the list-view in iBooks? From which position come the iBooks name? I can say that it isn't the file-properties (win7) or the iTunes-Information.
Thank you for the help.
Daniel

Thanks Laura,
This incident happened only once. I re-made another PDF using the same method and it was fine. I tried many time but I can't replicate the error/problem. The areas where was dropped out in the PDF is a solid color oval with 80% transparency, the other area is a gradient color with 100% transparency. There are similar areas like those in the document but strange enough they are not affected....
The PDF is exactly as expected on the Overprint Preview (using the very same outlined AI file, there is NO spot colors).

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