PDFX1a 2001 - WebNative has detected message appears?

From within indesign CS5 I have to export HIRES pdf files using the above settings. But when I go to export the pdf I have a message appear
'WebNative has detected that the Exported PDF not work with the PDF imaged Replacement worflow. Compatibility must be Acrobat 5 (PDF 1.4) or above and Stabdards Compliance must be none.'
After exporting the file I'm seeing thin lines in the pdf file. I have turned off smooth art in acrobat which looks fine, but when dragged into PS the lines are there?
Has anyone else seen this nessage before using PDFX1a 2001.
lister

Thanks guys,
it seems like the Machine im working on has a plugin using WebNative tool?. Unfortunately I have no admin rights to the extensions so I cant seem to turn off this feature. Is PDF/X-1a 2001(PDF 1.3) a standard Printer option these days? I suppose most printers supply their own pdf and flatterning settings.
I switched the PDF/X-1a 2001 to PDF1.4 instead of 1.3 and changed the Flatterner preset to 2540ppi and it bypassed this error. Also the lines dissapeared (Acrobat still highlighted the flatterning so I turned the pref off, rasterised the pdf in PS and the lines were gone.)
it seems to only pop up when using the PDF settings.
Thanks
lister

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PDFX1a 2001 - WebNative has detected message appears?

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