Pesky Artifacting in Prores 422 HQ, Need to get rid of it!

Hey everyone!
So I'm coming up against a hard deadline soon, and my color correctionist is experience two major problems, a solution to one of them would solve it, but we're stuck.
I've got an issue in color, but the secondary way around it was to take our edited FCP session, then export to Apple Prores 422 HQ 720x486 16x9 and then import that into color as one solid file.
However, the export gives a slight bit of artifacting. I shot on Super16mm and had the footage created as 10 bit uncompressed videos. We cut that 10 bit uncompressed and now, exporting to that prores at those settings we're getting slight artifacting during character and frame movement. I'm getting pretty desperate as the deadline draws nearer, can anyone have any help?
The Color issue is, when importing our FCP session in Color, color decides it wants to read video information like slates, etc. that aren't contained in the FCP file. As if it wants to show us the raw video where our cuts came frame, as oppsed to just the film itself, which is cut how it should be. We're pretty clueless as to why it's doing this.
We wanted to export to Prores and import that into Color to avoid all that nonsense because we're pretty clueless as to why Color decides to do this.
Any help would be MUCH appreciated! Thanks so much!
Will

Are you sure the artifacts are actually there. Try roundtripping and view the results on a Video monitor, not your mac monitor.
You might try doing a mediamanage staying with your original format without handles and see if that comes into color correctly.

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