Pictures rotated 90 degrees after separation in Photoshop

In an InDesign CS3-document all the pictures were RGB. I separated them in Photoshop CS3, saved them with same name and updated in InDesign. All the pictures that were rotated in the document got an extra 90 percent rotation. Pictures not rotated were not affected. Seems like a bug to me, but could not find any topic on it when searching this forum. Anybody knows?

I think this can have something to do with if the software reads the EXIF from digital images or not. My Canon can add some info to the image if the camera was held in portrait or landscape orientation when shot.
If portrait, they rotate automatically when opened in Photoshop, which I guess reads that info from the EXIF-data. But if placed directly in InDesign, they come in as landscape so I need to rotate them there. If I then edit original in Photoshop they take an extra turn when updated in Indesign needing to be rotated again.
Needles to say, that particular feature is now disabled in the camera.

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