Pinch and zoom stop my hyperlinks working

i have a folio that works well and navigates as it should, my customer requested pinch and zoom so i added it (my inDesign pages are all linked PDF files with hyperlinks on them so it was just a case of rebuiling the articles and Folio with the PDF format). Now the pinch and zoom work but all my hyperlinks are broken, any ideas, hopefully it is just a setting i need to change.
i have both folios active in different acrobat.com accounts and i updated all my software 8th Feb 2012.
I need to release this as an App ASAP through the DPS single edition but i don't want to pay for it until i know it will work.
Cheers.

Yes that is it - i have a few strange issues but i am solving them 1 by 1 and it is looking good now.
Changes the mood of the conference call tomorrow.
with any luck i will be able to submit it to Apple tomorrow.
Thank you!!!!

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