Pitch Correction doesn't hold my changes

I tried using the pitch correction on a couple of spots...got the tool to give me a complete flat line on a G note and saved my changes...went back to the song, but it still didn't sound quite right...went back to the same part that I corrected and noticed that the flat line I created was no longer straight across...the line was jagged and had to be "re-aligned".
Has anyone else had this happen?

I'm assuming that you are using the manual mode
"got the tool to give me a complete flat line on a G note and saved my changes"
As this is a destructive action then the change has been applied once you press 'OK'
"went back to the same part that I corrected and noticed that the flat line I created was no longer straight across"
Here I'm not sure what you mean - do you mean that with several points you created a flat line - ie litrerally a straight line?
or do you mean that you changed the audio to sing at a constant pitch?
Either way the points become meaningless once the effect has been applied as the points would then be referencing a different sounding piece of audio
Am I not understanding the problem?
Not sure if this helps but this is a bit of a tutorial we slapped together a while back
http://www.aatranslator.com.au/training.html

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