Please assist: how to keep changes to custom.conf

To prevent exposing http header information, we modified $IAS_ORACLE_HOME/Apache/Apache/config/custom.conf file, and would like to keep the changes from being overwritten by autoconfig. We changed in template $FND_TOP/admin/template/custom/custom_conf_1013.tmp, and run Autoconfig.
After, we see all the files in $INST_TOP/ora/10.1.3/Apache/Apache/conf directory were updated, except for the custom.conf file. Can anyone tell us what we may have missed? Would like our manual changes to be there.

Hi user;
When you run autoconfig it changed some entery if you edit it manually. Please check below links which could be helpful for your issue. If its not help please log a Sr to take support from autoconfig team
Subject: Interesting links around Autoconfig in the E-Business-Suite Doc ID: 949160.1
Subject: Using AutoConfig to Manage System Configurations with Oracle Applications 11i Doc ID: 165195.1
Subject: Autoconfig FAQ Doc ID: 218089.1
Customizing AutoConfig Environment
http://oracle-page.blogspot.com/2007/05/customizing-autoconfig.html
Customizing the Autoconfig
Re: Customizing the Autoconfig
Regard
Helios

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