Please explain the relationship between sequence setting and output

I am looking for an explanation of the sequence setting and the output settings (Mac Quad core, 10.7.4 - CS6 Production Premium, PR)  I am primarily working in AVC-I 100 and XDCam. I've found that I can drop in AVC-I into a Seq and it will set the Seq to that codec. Many times I'll need to send the in-progress and final edits to my clients as an WMV (HD) video file. In FCP, I would export the self contained seq and use Episode to transcode to wmv. I'm having trouble understanding the best way to do this in PR (CS6).  I've found that if I leave the Seq setting to the AVC-I, the render and the file output is a 50% quality mpeg-I. Is it best to set up a custom sequence w/ ProRes as the render codec? I'm having a hard time finding or getting an explanation of best practices for this type of operation. Any guidance would be appreciated.
Thanks,
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Remember I said you could force Pr to use your rendered preview files instead of the source media for export?  Selecting Match Sequence Settings in the Export Media dialog is how you force it.  Don't do that.  And don't shoot the messenger -- I've lobbied against that label for that control for 2 versions now.
Some Export formats, like H.264 Blu-ray and MPEG2-DVD, have an available Preset called "Match Source Attributes".  If you choose that Preset, you get something like this:
For details on setting up a sequence, see the Help files:
http://help.adobe.com/en_US/premierepro/cs/using/WS3E67AF4C-B2A2-4f04-90B4-F8CCFB74B144.ht ml#WSd79b3ca3b623cac941d41a681247d1f35a4-7fff
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