Please help me to sort out this problem

Hi All,
I am using indesign CS4 and Mac OSX. I created one indesign document and did ps to PDF. I used OTF font. After pdf created i realise some characters are come as junk, that means some character like "hn" are come as Ϋ. Then i recreated the PDF with same settings, it's come perfectly without glyph applied.
Anyone know how it happened and why it happens?
It is useful bwcause i can't proofread all the contents each time. Because i don't know when it comes wrong!
Thanks in advance

Hello,
We have been having similar Issues as above.
We are getting font character "Glyphs replacing other characters"
Specs of the machines
Mac OsX=10.5.8
ID version=ID-CS5 ver 7.0.3
Acrobat Distiller version = 8.0
Suitcase version=12.1.7 (We do not use suitcase anymore thinking this was the issue, we place the fonts into the Indesign CS5 font folder)
Fonts we have had this issue with
Sabon LT Std.
Garamond MT Regular
Fairfield LT STD
TimesLT Std
Palatino LT Std
Minion Pro Regular
Verdana Italic
Times New Roman PS
Characters that have been causing the issues.
io, il, hn, SY
The characters they are replaced with.
Ú Ÿ Õ Š Ỳ §
We run font cache cleaners such as Font Nuke, Font smasher and we even created our own from information found in other places where all the font cache's hide as well as suitcase's.
We tend to catch this issue in out PDF files we are actually but it does show up in the Indesign file, but you can close indesign and then reopen it and the issue is gone.
This lead us to believing it was a system font cache issue.
We process many jobs on a given day via 3 different machines that are setup to create PDF files.
We have a Process in place that before every job we clean the font cache and restart the machine.  Now I do not know if people are following this procedure all the time but we do have this issue appear like every 3 weeks when we get more work going thru the workflows.
I am looking for other Solutions to what this could be, would upgrading to cs5.5 help solve this issue? Could it be Indesigns Preference file getting bashed as well?  How can I better search for these characters.
We have been finding new characters it has replaced so its not always the same characters one time it was
joŸ =john
joÚ =john this was the latest.
Thank you for any responses.
Matt

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