POOR image quality once files are in the sequence

I have been doing screen captures in Screen Flow and/or IshowU HD Pro to combine with DV NTSC footage in Final Cut Pro. First of all, all of the captured screen footage looks really bad when exported with compression unless it is exported lossless. Any attempt at compression seems to make a very poor fuzzy image. If I take a high quality lossless screen capture in to final cut it looks bad once it is in the sequence window. Specifically all writing that is small or any hard lines on the screen appear to be jaged, and generaly unreadable. Both screen capture programs (IshowU and Screen Flow) seem to work fine, I believe the prolem is within Final Cut, any ideas? Any help will be much appriciated.
Thank you,
GS Love
Message was edited by: gslove

sorry about the shout. thanks for the great feedback, you guys are awesome.
ok, so here is the info:
compressor: animation
frame size: 1440 x 900
frame rate: 29.97 fps
target: web dist. ... so will eventualy need to de-interlaced
monitor: canvas window (i think) i am viewing the footage on my laptop screen
The viewer/monitor is probably not the problem. I distributed a similar project on the web with the same problem. The video footage was excellent but the photoshop palettes were un readable.
It is being edited with footage from the GL1 (DV/DVCSpro/NTSC) which is 29.97 fps and a frame size of 720 x 480. The footage that we are having the problem with is footage that is captured from a screen capture program, we are trying to see pallets from photoshop clearly on a documentary/ tutorial.
When we view clips from the screen capture program in the final cut browser window they are perfect. But as soon as they go into the sequence (even after rendering or exporting) they look like poop . . The images look offset, like seeing double. Also a bit of colorfull digital noise, just in letters and lines that were black in the source footage.

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