Poor performance of Premiere Pro on 2013 Mac Pro

A month ago I bought a 2013 Mac Pro mostly for running Premiere Pro CC. The configuration is 6 cores @ 3.5 GHz, 64 GB RAM, 2 x D700 graphics, 1 TB internal SSD. It runs OS X Mavericks 10.9.4.
I tried Premiere Pro CC today for the first time. The input--entirely stored on the internal SSD; no external disk was even connected--was about 100 clips shot as AVCHD (1080p25 PAL) at 24 Mbps.
I edited this in Premiere Pro and added small adjustments (mostly changes of levels) in about 20 clips. The rest had no adjustments. There were no transitions applied. For the most part, it just had to copy the trimmed input clips to the output.
I queued this for Adobe Media Encoder CC at H.264, 1080p25, @ 24 Mbps VBR 2 pass. Audio was 192 kbps, 48 kHZ,stereo. The output was written to the internal SSD.
While encoding, the CPU was running 50-70% idle (!!!) so it was using only 2-3 cores and half the memory (32GB) was unused. It certainly wasn't trying very hard. No other programs except Premiere, AME, and the activity monitor were open during encoding and I was just sitting there watching it lumber along.
The time to encode the timeline of 9:47 was 21:28. That is 2.2x real time. My 4-year-old Windows machine using CS6 could do that. What's wrong? Should Premiere Pro be this slow on hardware this fast? Is there some secret box "Use all the cores and all allowed memory" that I have to check (I set the preferences to allow Adobe to use 52 GB). Does Premiere get tired in the evenings? The internal SSD runs at 900 MB/s and there was no transcoding to do. What was going on?
This is my first test of Premiere and it is kind of disappointing. Did I just waste 6500 euros on the Mac Pro or am I using the wrong settings. Any advice is welcome.
Thanks.

Yes, should be great if someone put some light in all this performance thing in the new mac pro, I just did a test, 3 video tracks with 4K Red footage, 50% of opacity each one and I just play the 2 min sequence, and Premiere started to drop frames at half resolution playback and when I changed to full resolution playback the sequence was unplayable, I mean, they sold this MacPro/Premiere workflow as the way to edit 4K without compromises and now we are not capable to deliver jobs because the poor performance... and I'm not talking now about the constant crashes and freezes, I'm talking about that we can't play just 3 tracks without any effect.
Would be great if someone put some light on this, maybe we are blaming adobe and it's apple's fault and we should go to the apple store to return the machine... I did test on the Mac and looks OK, I'm more than confuse about this...

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