Post processing activities in BW when only the source R.3 system upgrades

We are currently upgrading from 4.6C to ECC 6.0 or ERP 5.0. We have a BW 3.5.2 connected to the existing 4.6C system.
1) Apart from clearing the delta queue and deleting the set-up job is there any other activity I need to do before the R3 upgrade begins.
2) Once the R3 system is upgraded and unicode enabled apart from connecting the two system and restoring with replication, do I need to do any other post processing in BW or R3
3) The plugin levels are different in BW and R3.
   BW -- PI_BASIS     2004_1_640     0006     SAPKIPYI66     Basis Plug-In (PI_BASIS) 2004_1_640
   ERP -- PI_BASIS     2005_1_700     0009     SAPKIPYJ79     PI_BASIS 2005_1_700
   do we need to upgrade the plugin on BW side or this should work fine.
I am trying to find out any pre or post processing I need to do on R3 or BW side for source system upgrade or any points on testing existing BW system with new source system.
Any help/pointers appreciated.
Thanks
-Pratap Gulabrao

Hi,
I think you had pretty much covered most of the preparation work.... Normally we clear up the delta queue, halt all the scheduled jobs prior to the upgrade and after the upgrade, restore the connection, activate all the transfer structures and update rules again and resume all scheduled jobs.
As for plug-ins, this website should provide what you need :
https://websmp201.sap-ag.de/r3-plug-in
Hope this helps.
Cheers,
Gimmo

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