PowerMac G5 Freezing

Hey everyone. I've been having some trouble with a Mac in my possession and was hoping for some insight.
Apparently from the first few weeks of use this computer has experienced random lock-ups when running basic programs (Safari, Terminal, iTunes, etc.). It could be sitting idle for a few hours and then freeze, or within the first 2-3 minutes of using Safari, or within a song in iTunes...you get the idea. So I ran through all the regular stuff - checked for and updated system software, looked for firmware updates, and watched the 'top' command from time to time. None of these cleared up the problem. So then I tried a re-install of the OS (originally 10.3.9). This also proved fruitless, as the computer resumed stalling in all the previously mentioned ways. Next, I tried wiping the drive to all zeros and installing OSX 10.4. Once the OS was up, I ran the Software Updater to get all the latest patches. I ran the system for a few minutes in various programs before experiencing yet another freeze. So now I got down to the hardware...
First, I tried running the Apple Hardware Test disc that came with the Mac. I ran a short and long test, both of which passed. I then ran the Long Test on loop for 12.5 hours (12 loops). All passed without incident. The machine stayed running the entire time, never once crashing. Next, I removed the hard drive and zeroed it using a Seagate utility, hoping it was something the Apple software did. Reinstalled, patched...freeze. So I tried a different hard drive in its place. Zeroed it, installed 10.4, patched. Froze again. At this point, I got a bit frustrated. So, I attempted running a Linux PPC LiveCD on the machine. To my surprise, it ran like a champ. I had at least 6 programs running, playing music, browsing the web, running a game, etc. No freezes, no hiccups for 4 hours of use. Booted back into 10.4, and froze within minutes.
So finally, I tried the memory modules. I pulled all four, put them into my PC and ran memtest86. I let this run for about 3.5 hours. No errors reported. So I figured I'd try only plugging so many modules back in, leaving one slot empty. I tried this with all four, with no luck. (Interestingly, when I tried removing the Slot 0 DIMM and starting, the machines power light blinked three times repeatedly. Couldn't get to OSX until I replaced em all and rebooted.)
So, I'm not sure this is a hardware problem, seeing as how Linux PPC ran fine. Although I'm not sure it's not either. Maybe Linux didn't hit a bad segment of memory, processor, etc. I know that probably no one has seen a situation like this, but I've been all over these forums for the past week looking for answers, and coming up short.
Any help you all could provide would be GREATLY appreciated.
Thanks again!
PowerMac G5 1.6GHz   Mac OS X (10.4.9)   1.25 GB RAM, 80GB HDD

So I've tried running the AppleJack utils. It completes and asks to have the machine restarted. Upon getting back into OS X I find that the freeze phenomenon is still present. I was hoping that I could pull the memory modules from my PC and try them in the G5, however I've run into a problem there too. I have 2 1GB DDR400 memory modules (matched) in my PC. The Mac uses 4 modules, 2 512MB DDR333 modules and 2 128MB DDR333 modules. They appear to be set up for dual channel operation. I tried removing all 4 DIMMs from the Mac and placing 1 of my 1GB pieces in Slot 0 of the DDR bank. Upon bootup, the power indicator blinks once with a 1-2 delay before a similar blink. Does the machine require a dual channel setup? Is it complaining because the memory config. has changed? Will the Mac's logic board not accept the DDR400 (i.e. not scale back the memory to operate at DDR333)?
This is one of the last ideas I have for this machine. I'm afraid that soon I may have to have someone from Apple diagnose it to find out if it's a logic board / processor issue. In that instance, how has everyone's experience been with them? Do the techs know whats going on, or is it hit-or-miss?
Thanks again everyone. I appreciate the help.

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