Pr Sequence sent to AME drops whole tracks or clips touched by Edit in Adobe Audition

On an increasingly frequent basis in CS5.5 I have observed sequences sent from Pr to AME failing to include certain replaced audio clips (from Edit Clip in Adobe Audition) or several whole tracks (2 & 3). In the most recent example the same sequence was sent to AME and duplicated three times producing four formats none of which contained tracks 2 & 3. Once discovered [days and restarts later] the offending prproj was reopened, the unchangeed sequence was sent back through AME, and now the output includes the missing track 2 & 3.
What can cause clips or whole tracks to be missing from the output in one export but included in another with no other changes? Shouldn't AME compalin if it was told to encode a resource that a Pr Sequence referred to that AME can't find?
The audio clips on track 2 & 3 in this recent even were likely pasted into the Pr Sequence after having been copied from a another file's sequence; Volume levels would have been previewed and adjusted exensively in the target sequence they were pasted into, and [usually] a save executed before the Export/Media was called.

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Pr Sequence sent to AME drops whole tracks or clips touched by Edit in Adobe Audition

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