Premiere CS6 Capture Problem

Hi,
I have a HD Sony Camera output HDSDI to a Blackmagic ATEM 1 switcher. From there I output to a Blackmagic UltraStudio Express via HDSDI. I capture in Premiere CS6. We capture about 1 1/2 - 2 hours of footage every session. A number of times, when I press stop on the capture window, the save box never comes up. I would wait up to half and hour sometimes and it doesn't come up at all. I'm forced to close the capture window and I have a dud file that's about 140gb.
Does anyone know why the save window wouldn't come up after I push stop? Premiere still works fine after I close the capture window. It's like the capture crashes but Premiere is fine.
Thanks for the help!
Clark

I ev been Using Premiere since ages .. Same setup works fine on my other machiene But I custom Made this and put very expensive Quadro6000 in it and now what ever setting I start it only Captures .mp3 formate ... last nite funny thing happened I Played That mp3 File on a Video Conveter's Player and it played all fune with Video and Sound ..
Premiere is creating this File but unable to read it   makes me Cry .. I thing there is some Codec missing .. I am ZerO when it comes to Computers Hard and soft wares .. Plz see if you can hel me ..

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