Premiere Pro 2.0 and jerky transitions

This is my first time attempting to edit HD video and it's really throwing me for a loop.  Basically, I made my video then exported to DVD.  The video looks great, but transitions are jerky, some with frames jumping all around.  To emphasise, this is RENDERED video.  It does the same thing either as exported video or after rendering the work area.  I have tried using various transitions or placing the video in different layers and fading using opacity and keyframes, both having the same results.  The problem appears to only happen when two videos are over one another.  If I just fade from say black, it's typically fine.  Another oddity is not all transitions are jerky.  Some are as smooth as can be!
Video is from a pair of identical cameras both recording at 1080p encoded to MPEG4.  ffdshow is being used to load the videos.  The project is the default DV-Widescreen.  Premiere Pro 2.0 in Vista x64.  System specs are i7 920, 6GB RAM, 160GB/500GB drives, Geforce 9800GT.

The problem appears to only happen when two videos are over one another.  If I just fade from say black, it's typically fine.  Another oddity is not all transitions are jerky.  Some are as smooth as can be!
Read up on Handles. If one does not have adequate Handles in the Clips, the last frame is repeated as many times as is necessary, and the Transitions can appear very jerky.
Also, as Jim points out, your Project Preset should match your footage. You can then alter your Export setting for your intended delivery scheme.
Good luck,
Hunt

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