Premiere to Flash workflow ?  (Maybe AEFX to Flash)

Hopefully someone has some experience with Premiere to Flash workflows and can help me here. (Apart from encoding some flvs...I have none!)
I am shooting a number of people separately on a chroma bg so that in the end result they will appear composited alongside each other on a web page. (on a white bg).
They respond to mouse clicks with some action and dialogue.
Obviously I need to key the scenes in Premiere or AEFX (unless Flash can do a key?).
What do I supply to the Web page Author?
(I belive I should supply them with best source material)
- I can NOT produce an avi/mov from Premiere with an alpha channel
- I CAN produce an avi /mov from AEFX with an alpha channel (slow process for 100+ clips)
- what / how to do this? eg can flash files have transparency.

O.K
It is possible to encode an alpha channel into an flv from Premiere and it works perfectly (but is limited by the quality of the Keyers in Premiere.)
Will be fine for the web page project I am doing and will be a lot quicker. (Batch Encoding - woooohooooo!)
BTW: There is an Encode alpha button in the flv export settings.
(I would like to thank me for all my help)

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